miRNA display CGI


Results 1 - 20 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6614 5' -56 NC_001847.1 + 79799 1.11 0.002319
Target:  5'- gCCGCCGUGGUACCAGGAACACCGUGGc -3'
miRNA:   3'- -GGCGGCACCAUGGUCCUUGUGGCACC- -5'
6614 5' -56 NC_001847.1 + 12070 0.7 0.761431
Target:  5'- aCGCCGag--GCCGcGGAGCGCCGcGGg -3'
miRNA:   3'- gGCGGCaccaUGGU-CCUUGUGGCaCC- -5'
6614 5' -56 NC_001847.1 + 74124 0.69 0.779057
Target:  5'- cCCgGCCGUGGUgcugcgcguggcGCCGGGGcgaaugauggcgGCGCCucucggcGUGGg -3'
miRNA:   3'- -GG-CGGCACCA------------UGGUCCU------------UGUGG-------CACC- -5'
6614 5' -56 NC_001847.1 + 77495 0.66 0.927342
Target:  5'- cCCGCCGgcccgagucGGUgGCCGGGGAgcuCGCgCGUGc -3'
miRNA:   3'- -GGCGGCa--------CCA-UGGUCCUU---GUG-GCACc -5'
6614 5' -56 NC_001847.1 + 49318 0.72 0.612982
Target:  5'- gCUGCCccUGGUGCgCGGGcuCACUGUGGa -3'
miRNA:   3'- -GGCGGc-ACCAUG-GUCCuuGUGGCACC- -5'
6614 5' -56 NC_001847.1 + 132401 0.71 0.653368
Target:  5'- gCCGCCGcgccGG-GCCGGGGGC-CgGUGGa -3'
miRNA:   3'- -GGCGGCa---CCaUGGUCCUUGuGgCACC- -5'
6614 5' -56 NC_001847.1 + 45139 0.71 0.693486
Target:  5'- aCGCCGaGGUGCCGGcgguGAGCGCgG-GGg -3'
miRNA:   3'- gGCGGCaCCAUGGUC----CUUGUGgCaCC- -5'
6614 5' -56 NC_001847.1 + 63550 0.71 0.703412
Target:  5'- gCCGCC-UGGgccggcGCCGGGcGGCACUGUGa -3'
miRNA:   3'- -GGCGGcACCa-----UGGUCC-UUGUGGCACc -5'
6614 5' -56 NC_001847.1 + 89810 0.7 0.732804
Target:  5'- aCGCCGUGGcACCGccguGGAGCGCgCGg-- -3'
miRNA:   3'- gGCGGCACCaUGGU----CCUUGUG-GCacc -5'
6614 5' -56 NC_001847.1 + 66489 0.7 0.761431
Target:  5'- aCGUCGUGcGUgucgGCCAGcGGCGCgGUGGa -3'
miRNA:   3'- gGCGGCAC-CA----UGGUCcUUGUGgCACC- -5'
6614 5' -56 NC_001847.1 + 74836 0.7 0.742443
Target:  5'- gCGCCcaucGUGGUGCgcuuUAGGGGCgGCUGUGGu -3'
miRNA:   3'- gGCGG----CACCAUG----GUCCUUG-UGGCACC- -5'
6614 5' -56 NC_001847.1 + 32604 0.7 0.732804
Target:  5'- gCCGCCGUcGcgGCCGacacGGAgcggcugcacgACGCCGUGGa -3'
miRNA:   3'- -GGCGGCAcCa-UGGU----CCU-----------UGUGGCACC- -5'
6614 5' -56 NC_001847.1 + 79396 0.77 0.348265
Target:  5'- cUCGCCGUGGggcugagcgcgUACUAGGAcCGCCGUGc -3'
miRNA:   3'- -GGCGGCACC-----------AUGGUCCUuGUGGCACc -5'
6614 5' -56 NC_001847.1 + 31096 0.7 0.761431
Target:  5'- gCGCUG-GG-GCCGGGcAGCGCgGUGGc -3'
miRNA:   3'- gGCGGCaCCaUGGUCC-UUGUGgCACC- -5'
6614 5' -56 NC_001847.1 + 28467 0.73 0.543096
Target:  5'- gCCGCCGUGGcacgacgcGCCGcGGACGCCGcGGc -3'
miRNA:   3'- -GGCGGCACCa-------UGGUcCUUGUGGCaCC- -5'
6614 5' -56 NC_001847.1 + 81036 0.7 0.732804
Target:  5'- gCCGCCGcGG-ACUgcGGGGGCGaCGUGGg -3'
miRNA:   3'- -GGCGGCaCCaUGG--UCCUUGUgGCACC- -5'
6614 5' -56 NC_001847.1 + 130664 0.7 0.761431
Target:  5'- aCGCCGgc--GCCAGGGACGCgGgGGg -3'
miRNA:   3'- gGCGGCaccaUGGUCCUUGUGgCaCC- -5'
6614 5' -56 NC_001847.1 + 41623 0.7 0.761431
Target:  5'- uCCGCCGUGaugGCCGcgagcGGcGCGCCGgGGg -3'
miRNA:   3'- -GGCGGCACca-UGGU-----CCuUGUGGCaCC- -5'
6614 5' -56 NC_001847.1 + 92743 0.73 0.592843
Target:  5'- -aGCgCGUGGcagGCCAGGAccuCGCCGUGc -3'
miRNA:   3'- ggCG-GCACCa--UGGUCCUu--GUGGCACc -5'
6614 5' -56 NC_001847.1 + 32941 0.71 0.693486
Target:  5'- cCCGCgCGcGGUGCCcgcGGAcaGCGCgGUGGc -3'
miRNA:   3'- -GGCG-GCaCCAUGGu--CCU--UGUGgCACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.