miRNA display CGI


Results 41 - 60 of 193 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6617 3' -55.3 NC_001847.1 + 34444 0.66 0.912924
Target:  5'- cGGGCCGcGGACGagGCCgcggUGGCCgccg-GCg -3'
miRNA:   3'- -CCUGGC-CCUGC--UGG----GCCGGaaauaUG- -5'
6617 3' -55.3 NC_001847.1 + 101164 0.66 0.906878
Target:  5'- gGGGCCGGGGCcggggucggGGCgCGGUCUa----- -3'
miRNA:   3'- -CCUGGCCCUG---------CUGgGCCGGAaauaug -5'
6617 3' -55.3 NC_001847.1 + 50210 0.66 0.906878
Target:  5'- cGugCGuGGACGA-CUGGCCg--AUGCu -3'
miRNA:   3'- cCugGC-CCUGCUgGGCCGGaaaUAUG- -5'
6617 3' -55.3 NC_001847.1 + 13550 0.66 0.906878
Target:  5'- -cGCCGGGGCGGCgCGGUgggu-UGCa -3'
miRNA:   3'- ccUGGCCCUGCUGgGCCGgaaauAUG- -5'
6617 3' -55.3 NC_001847.1 + 91709 0.66 0.906878
Target:  5'- --cCCGGGucGCGACgCCGGCCa------ -3'
miRNA:   3'- ccuGGCCC--UGCUG-GGCCGGaaauaug -5'
6617 3' -55.3 NC_001847.1 + 71658 0.66 0.906878
Target:  5'- gGGGCCGcGA--ACCUGGCCUgguaGUACg -3'
miRNA:   3'- -CCUGGCcCUgcUGGGCCGGAaa--UAUG- -5'
6617 3' -55.3 NC_001847.1 + 120283 0.66 0.906878
Target:  5'- cGACCauGGGGuCG-CCCGGCCgcauguaAUACa -3'
miRNA:   3'- cCUGG--CCCU-GCuGGGCCGGaaa----UAUG- -5'
6617 3' -55.3 NC_001847.1 + 122407 0.66 0.906878
Target:  5'- aGGcGCUGGGcCGcACCCGGCCc------ -3'
miRNA:   3'- -CC-UGGCCCuGC-UGGGCCGGaaauaug -5'
6617 3' -55.3 NC_001847.1 + 98887 0.66 0.906878
Target:  5'- -cGCCuGGGCGGCCCaGGCCg------ -3'
miRNA:   3'- ccUGGcCCUGCUGGG-CCGGaaauaug -5'
6617 3' -55.3 NC_001847.1 + 51939 0.66 0.906261
Target:  5'- uGGCCGGGgcgcgacggccgcGCGACCCcgcGGCagugAUGCa -3'
miRNA:   3'- cCUGGCCC-------------UGCUGGG---CCGgaaaUAUG- -5'
6617 3' -55.3 NC_001847.1 + 92176 0.67 0.900596
Target:  5'- cGGGCCGGccGGCGGCCC-GCCc------ -3'
miRNA:   3'- -CCUGGCC--CUGCUGGGcCGGaaauaug -5'
6617 3' -55.3 NC_001847.1 + 113512 0.67 0.900596
Target:  5'- cGcCCGGGcGCGGCCCGcGCCg------ -3'
miRNA:   3'- cCuGGCCC-UGCUGGGC-CGGaaauaug -5'
6617 3' -55.3 NC_001847.1 + 130445 0.67 0.900596
Target:  5'- cGGACCucggcccgacggGGGGCucggaggaaGACCCGGCCc---UGCu -3'
miRNA:   3'- -CCUGG------------CCCUG---------CUGGGCCGGaaauAUG- -5'
6617 3' -55.3 NC_001847.1 + 129457 0.67 0.900596
Target:  5'- -uGCCGGGucuggGCGGCCCcGGCCg------ -3'
miRNA:   3'- ccUGGCCC-----UGCUGGG-CCGGaaauaug -5'
6617 3' -55.3 NC_001847.1 + 84775 0.67 0.900596
Target:  5'- cGGCCagcaGGGCGACgCCGGCCa------ -3'
miRNA:   3'- cCUGGc---CCUGCUG-GGCCGGaaauaug -5'
6617 3' -55.3 NC_001847.1 + 88940 0.67 0.900596
Target:  5'- cGGcCCGGcGGCGGCcgccgCCGGCCgcuaccgcGUGCg -3'
miRNA:   3'- -CCuGGCC-CUGCUG-----GGCCGGaaa-----UAUG- -5'
6617 3' -55.3 NC_001847.1 + 10699 0.67 0.900596
Target:  5'- cGcCCGGGcGCGGCCCGcGCCg------ -3'
miRNA:   3'- cCuGGCCC-UGCUGGGC-CGGaaauaug -5'
6617 3' -55.3 NC_001847.1 + 34549 0.67 0.900596
Target:  5'- uGGCCGGG-CuGCUCGGCCgc--UGCa -3'
miRNA:   3'- cCUGGCCCuGcUGGGCCGGaaauAUG- -5'
6617 3' -55.3 NC_001847.1 + 27632 0.67 0.900596
Target:  5'- cGGACCucggcccgacggGGGGCucggaggaaGACCCGGCCc---UGCu -3'
miRNA:   3'- -CCUGG------------CCCUG---------CUGGGCCGGaaauAUG- -5'
6617 3' -55.3 NC_001847.1 + 26644 0.67 0.900596
Target:  5'- -uGCCGGGucuggGCGGCCCcGGCCg------ -3'
miRNA:   3'- ccUGGCCC-----UGCUGGG-CCGGaaauaug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.