miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
662 3' -47.7 AC_000018.1 + 22530 0.66 0.960852
Target:  5'- cCGUgcugGCAa-GCGuGAGAcACCCAGCCu -3'
miRNA:   3'- -GCAaa--UGUccCGC-CUUUuUGGGUUGG- -5'
662 3' -47.7 AC_000018.1 + 21372 0.66 0.956597
Target:  5'- ----aGCAGGGUGGGcucauccauGGGAUCC-ACCu -3'
miRNA:   3'- gcaaaUGUCCCGCCU---------UUUUGGGuUGG- -5'
662 3' -47.7 AC_000018.1 + 26278 0.66 0.952038
Target:  5'- aCGag-ACcGGGCGauucccAAACCCGACCa -3'
miRNA:   3'- -GCaaaUGuCCCGCcuu---UUUGGGUUGG- -5'
662 3' -47.7 AC_000018.1 + 16169 0.66 0.946664
Target:  5'- -uUUUGCAGcucgcauGGCGGGAGuAGCCCuguggcGCCu -3'
miRNA:   3'- gcAAAUGUC-------CCGCCUUU-UUGGGu-----UGG- -5'
662 3' -47.7 AC_000018.1 + 4565 0.67 0.936477
Target:  5'- ----aACuuuGGGCGGAGGGugCCAGa- -3'
miRNA:   3'- gcaaaUGu--CCCGCCUUUUugGGUUgg -5'
662 3' -47.7 AC_000018.1 + 31577 0.67 0.924501
Target:  5'- gGUagACAGGGUugaaGGAAucACUgAGCCg -3'
miRNA:   3'- gCAaaUGUCCCG----CCUUuuUGGgUUGG- -5'
662 3' -47.7 AC_000018.1 + 6683 0.68 0.911232
Target:  5'- ----gAgGGGGCGaGAAGACCCgGGCCc -3'
miRNA:   3'- gcaaaUgUCCCGCcUUUUUGGG-UUGG- -5'
662 3' -47.7 AC_000018.1 + 24883 0.68 0.911232
Target:  5'- -----uCGGGG-GGAGuugguACCCAGCCa -3'
miRNA:   3'- gcaaauGUCCCgCCUUuu---UGGGUUGG- -5'
662 3' -47.7 AC_000018.1 + 10935 0.68 0.896684
Target:  5'- cCGUcaGCGGcGCGGGAcAGCCC-GCCu -3'
miRNA:   3'- -GCAaaUGUCcCGCCUUuUUGGGuUGG- -5'
662 3' -47.7 AC_000018.1 + 11206 0.68 0.896684
Target:  5'- cCGUcaGCGGcGCGGGAcAGCCC-GCCu -3'
miRNA:   3'- -GCAaaUGUCcCGCCUUuUUGGGuUGG- -5'
662 3' -47.7 AC_000018.1 + 21962 0.68 0.896684
Target:  5'- cCGUUcAUGGGGCGGucGGGCCaGugCa -3'
miRNA:   3'- -GCAAaUGUCCCGCCuuUUUGGgUugG- -5'
662 3' -47.7 AC_000018.1 + 24225 0.68 0.880891
Target:  5'- aGUgcccauCAGuGUGGAAGAGCUUAGCCg -3'
miRNA:   3'- gCAaau---GUCcCGCCUUUUUGGGUUGG- -5'
662 3' -47.7 AC_000018.1 + 4067 0.69 0.845784
Target:  5'- -cUUUACAGGGUacuGGAAaAGAUCC-ACCg -3'
miRNA:   3'- gcAAAUGUCCCG---CCUU-UUUGGGuUGG- -5'
662 3' -47.7 AC_000018.1 + 1397 0.7 0.836326
Target:  5'- --gUUGgAGGGUGGGGAugGACCUuugGACCu -3'
miRNA:   3'- gcaAAUgUCCCGCCUUU--UUGGG---UUGG- -5'
662 3' -47.7 AC_000018.1 + 10958 0.7 0.826617
Target:  5'- aGUagUUACAGGaGCaGGAAGAGCCUuuuguGGCUg -3'
miRNA:   3'- gCA--AAUGUCC-CG-CCUUUUUGGG-----UUGG- -5'
662 3' -47.7 AC_000018.1 + 11230 0.7 0.826617
Target:  5'- aGUagUUACAGGaGCaGGAAGAGCCUuuuguGGCUg -3'
miRNA:   3'- gCA--AAUGUCC-CG-CCUUUUUGGG-----UUGG- -5'
662 3' -47.7 AC_000018.1 + 333 0.7 0.796105
Target:  5'- gGUUaugACAGGGUGGAGuauuuGCCgAggGCCg -3'
miRNA:   3'- gCAAa--UGUCCCGCCUUuu---UGGgU--UGG- -5'
662 3' -47.7 AC_000018.1 + 1365 0.71 0.752686
Target:  5'- aCGUUUGCAGGuGCGGGc--GCCUGAa- -3'
miRNA:   3'- -GCAAAUGUCC-CGCCUuuuUGGGUUgg -5'
662 3' -47.7 AC_000018.1 + 8441 0.72 0.718565
Target:  5'- cCGggcgGCAgGGGCGGcucGGGACCCGGCg -3'
miRNA:   3'- -GCaaa-UGU-CCCGCCu--UUUUGGGUUGg -5'
662 3' -47.7 AC_000018.1 + 27294 0.76 0.48509
Target:  5'- ----cAUAGGGCGGAAccGCCC-GCCa -3'
miRNA:   3'- gcaaaUGUCCCGCCUUuuUGGGuUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.