miRNA display CGI


Results 1 - 20 of 406 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6622 3' -46.6 NC_001847.1 + 86810 0.66 0.999937
Target:  5'- gGAGGACGGc--AAGCGCgGGCGGu-- -3'
miRNA:   3'- -CUCCUGUUuuuUUUGCGgCUGCUgcu -5'
6622 3' -46.6 NC_001847.1 + 123720 0.66 0.999937
Target:  5'- uGGGGCGGcAGcAGCGgCGGCGGCa- -3'
miRNA:   3'- cUCCUGUUuUUuUUGCgGCUGCUGcu -5'
6622 3' -46.6 NC_001847.1 + 105079 0.66 0.999937
Target:  5'- -cGGGCGGcacgcggcGGAAGcCGCCGuCGGCGGc -3'
miRNA:   3'- cuCCUGUU--------UUUUUuGCGGCuGCUGCU- -5'
6622 3' -46.6 NC_001847.1 + 18244 0.66 0.999937
Target:  5'- cGGGugGAuccAAGAugGCCGcgaccGCGGCGc -3'
miRNA:   3'- cUCCugUUu--UUUUugCGGC-----UGCUGCu -5'
6622 3' -46.6 NC_001847.1 + 124655 0.66 0.999937
Target:  5'- cGAGG-CG--GAGAACGaggacagCGACGACGAn -3'
miRNA:   3'- -CUCCuGUuuUUUUUGCg------GCUGCUGCU- -5'
6622 3' -46.6 NC_001847.1 + 130051 0.66 0.999937
Target:  5'- aGGGGAaGGAGAAGGCGCCGcACuGCc- -3'
miRNA:   3'- -CUCCUgUUUUUUUUGCGGC-UGcUGcu -5'
6622 3' -46.6 NC_001847.1 + 49597 0.66 0.999937
Target:  5'- cGAGGACAuuugccGCGCaguaGGCG-CGAg -3'
miRNA:   3'- -CUCCUGUuuuuuuUGCGg---CUGCuGCU- -5'
6622 3' -46.6 NC_001847.1 + 131675 0.66 0.999937
Target:  5'- cGGGGACGccauggccgcgcAGAAc-GCGCUGugGGCGc -3'
miRNA:   3'- -CUCCUGU------------UUUUuuUGCGGCugCUGCu -5'
6622 3' -46.6 NC_001847.1 + 37553 0.66 0.999937
Target:  5'- -cGGGCGGcccuucGGAAGACGC-GGCGGCGc -3'
miRNA:   3'- cuCCUGUU------UUUUUUGCGgCUGCUGCu -5'
6622 3' -46.6 NC_001847.1 + 27238 0.66 0.999937
Target:  5'- aGGGGAaGGAGAAGGCGCCGcACuGCc- -3'
miRNA:   3'- -CUCCUgUUUUUUUUGCGGC-UGcUGcu -5'
6622 3' -46.6 NC_001847.1 + 28862 0.66 0.999937
Target:  5'- cGGGGACGccauggccgcgcAGAAc-GCGCUGugGGCGc -3'
miRNA:   3'- -CUCCUGU------------UUUUuuUGCGGCugCUGCu -5'
6622 3' -46.6 NC_001847.1 + 43571 0.66 0.999937
Target:  5'- cGAGGAUGGccGAGGCGU--ACGACGGa -3'
miRNA:   3'- -CUCCUGUUuuUUUUGCGgcUGCUGCU- -5'
6622 3' -46.6 NC_001847.1 + 86905 0.66 0.999937
Target:  5'- cGAGGGCcagcuGAucGACGCCaugguGGCGGCGc -3'
miRNA:   3'- -CUCCUGuu---UUuuUUGCGG-----CUGCUGCu -5'
6622 3' -46.6 NC_001847.1 + 2266 0.66 0.999937
Target:  5'- -cGGGCGGcacgcggcGGAAGcCGCCGuCGGCGGc -3'
miRNA:   3'- cuCCUGUU--------UUUUUuGCGGCuGCUGCU- -5'
6622 3' -46.6 NC_001847.1 + 71074 0.66 0.999937
Target:  5'- cGAGGGCGGc-GAGGCGgCCGGCcagGGCGu -3'
miRNA:   3'- -CUCCUGUUuuUUUUGC-GGCUG---CUGCu -5'
6622 3' -46.6 NC_001847.1 + 21842 0.66 0.999937
Target:  5'- cGAGG-CG--GAGAACGaggacagCGACGACGAn -3'
miRNA:   3'- -CUCCuGUuuUUUUUGCg------GCUGCUGCU- -5'
6622 3' -46.6 NC_001847.1 + 107527 0.66 0.999917
Target:  5'- -cGGACGAGGAacGAugGCCG-CGccuaACGGg -3'
miRNA:   3'- cuCCUGUUUUU--UUugCGGCuGC----UGCU- -5'
6622 3' -46.6 NC_001847.1 + 43544 0.66 0.999917
Target:  5'- cGAGGA-----GAAGCGCCGcCG-CGAg -3'
miRNA:   3'- -CUCCUguuuuUUUUGCGGCuGCuGCU- -5'
6622 3' -46.6 NC_001847.1 + 100151 0.66 0.999917
Target:  5'- -cGGcCGGGAAGAGgGCCGACaGCGc -3'
miRNA:   3'- cuCCuGUUUUUUUUgCGGCUGcUGCu -5'
6622 3' -46.6 NC_001847.1 + 53728 0.66 0.999917
Target:  5'- cGGGGCGGAuc-GGCGCgCGGCGuagcGCGGa -3'
miRNA:   3'- cUCCUGUUUuuuUUGCG-GCUGC----UGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.