miRNA display CGI


Results 1 - 20 of 343 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6622 5' -63.2 NC_001847.1 + 84912 0.66 0.597505
Target:  5'- gCGUCGUCugCcGCGCCCUgcagcaUCGGCcagucguccacgcacGCGa -3'
miRNA:   3'- -GCAGUAGugGuCGCGGGG------GGCCG---------------CGC- -5'
6622 5' -63.2 NC_001847.1 + 134579 0.66 0.593613
Target:  5'- uCGUCGcCGCCAggcaggucaaucGUGCCCCCgGagaGCGCa -3'
miRNA:   3'- -GCAGUaGUGGU------------CGCGGGGGgC---CGCGc -5'
6622 5' -63.2 NC_001847.1 + 37173 0.66 0.593613
Target:  5'- gGUCAacaGCCucGCGCCgggagagCCCGGUGCGa -3'
miRNA:   3'- gCAGUag-UGGu-CGCGGg------GGGCCGCGC- -5'
6622 5' -63.2 NC_001847.1 + 134038 0.66 0.593613
Target:  5'- aGgCcgCGgCGGCGCCgCCCgCGGcCGCGg -3'
miRNA:   3'- gCaGuaGUgGUCGCGG-GGG-GCC-GCGC- -5'
6622 5' -63.2 NC_001847.1 + 31225 0.66 0.593613
Target:  5'- aGgCcgCGgCGGCGCCgCCCgCGGcCGCGg -3'
miRNA:   3'- gCaGuaGUgGUCGCGG-GGG-GCC-GCGC- -5'
6622 5' -63.2 NC_001847.1 + 65800 0.66 0.593613
Target:  5'- gCGcCAgCACCAGCGCCgCCagcaGCGCc -3'
miRNA:   3'- -GCaGUaGUGGUCGCGGgGGgc--CGCGc -5'
6622 5' -63.2 NC_001847.1 + 79688 0.66 0.593613
Target:  5'- gCG-CggCGC--GCGCCCCgCCGGCGCc -3'
miRNA:   3'- -GCaGuaGUGguCGCGGGG-GGCCGCGc -5'
6622 5' -63.2 NC_001847.1 + 113941 0.66 0.593613
Target:  5'- gGUCG-CGgCGGCGUCUCCUacgccgccgGGCGCGu -3'
miRNA:   3'- gCAGUaGUgGUCGCGGGGGG---------CCGCGC- -5'
6622 5' -63.2 NC_001847.1 + 34493 0.66 0.593613
Target:  5'- cCG-CcgCAgCAGCGCggCCCUGGCGCc -3'
miRNA:   3'- -GCaGuaGUgGUCGCGg-GGGGCCGCGc -5'
6622 5' -63.2 NC_001847.1 + 45142 0.66 0.593613
Target:  5'- gCGcCuUCugCGGggugcaGCCCCgCGGCGCGc -3'
miRNA:   3'- -GCaGuAGugGUCg-----CGGGGgGCCGCGC- -5'
6622 5' -63.2 NC_001847.1 + 49374 0.66 0.593613
Target:  5'- --aCcgCAUCGGcCGCugCCCCCGGCGUu -3'
miRNA:   3'- gcaGuaGUGGUC-GCG--GGGGGCCGCGc -5'
6622 5' -63.2 NC_001847.1 + 77376 0.66 0.593613
Target:  5'- cCGgcgagCACCAGCaGCCCCgUGGCcaGCGc -3'
miRNA:   3'- -GCagua-GUGGUCG-CGGGGgGCCG--CGC- -5'
6622 5' -63.2 NC_001847.1 + 61432 0.66 0.583903
Target:  5'- aCGcCcgCgGCC-GCGCCgCCgGGCGCGg -3'
miRNA:   3'- -GCaGuaG-UGGuCGCGGgGGgCCGCGC- -5'
6622 5' -63.2 NC_001847.1 + 118465 0.66 0.583903
Target:  5'- -cUCGUgcCugCGGCGCaaggCCCgGGCGCGc -3'
miRNA:   3'- gcAGUA--GugGUCGCGg---GGGgCCGCGC- -5'
6622 5' -63.2 NC_001847.1 + 104967 0.66 0.583903
Target:  5'- gCGUCGgccaggucCGCCgAGCGCCacgcaCCCagGGCGCa -3'
miRNA:   3'- -GCAGUa-------GUGG-UCGCGGg----GGG--CCGCGc -5'
6622 5' -63.2 NC_001847.1 + 47512 0.66 0.583903
Target:  5'- aGUUggCuuCCAGCGCagCCCgGGCGCc -3'
miRNA:   3'- gCAGuaGu-GGUCGCGg-GGGgCCGCGc -5'
6622 5' -63.2 NC_001847.1 + 40916 0.66 0.583903
Target:  5'- gGcCcgCGCgGGCGCCCCgCCGcgagcuccgccGCGCGc -3'
miRNA:   3'- gCaGuaGUGgUCGCGGGG-GGC-----------CGCGC- -5'
6622 5' -63.2 NC_001847.1 + 34530 0.66 0.583903
Target:  5'- ---gGUCGCCAGgGCCCgagCCUGGC-CGg -3'
miRNA:   3'- gcagUAGUGGUCgCGGG---GGGCCGcGC- -5'
6622 5' -63.2 NC_001847.1 + 135136 0.66 0.583903
Target:  5'- ----uUCuCC-GCGCCCCCCG-CGCGg -3'
miRNA:   3'- gcaguAGuGGuCGCGGGGGGCcGCGC- -5'
6622 5' -63.2 NC_001847.1 + 61466 0.66 0.583903
Target:  5'- gGUCGcgCAgCAGCGCCgCgucgCUGGCGCa -3'
miRNA:   3'- gCAGUa-GUgGUCGCGGgG----GGCCGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.