miRNA display CGI


Results 1 - 20 of 228 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6624 3' -60.9 NC_001847.1 + 110902 0.66 0.665296
Target:  5'- cGCCCgCCgcgcGGCGGCUGaacguggagaucGCCGAGCGc--- -3'
miRNA:   3'- -CGGG-GG----UCGUCGAC------------CGGCUCGUaguc -5'
6624 3' -60.9 NC_001847.1 + 78086 0.66 0.665296
Target:  5'- -gUCCgGGCGGC-GGCCGGGC-UCGa -3'
miRNA:   3'- cgGGGgUCGUCGaCCGGCUCGuAGUc -5'
6624 3' -60.9 NC_001847.1 + 78334 0.66 0.665296
Target:  5'- cGCCCCCAgGCGcGCcGGCCccguGAGCG-CGa -3'
miRNA:   3'- -CGGGGGU-CGU-CGaCCGG----CUCGUaGUc -5'
6624 3' -60.9 NC_001847.1 + 113289 0.66 0.665296
Target:  5'- aGCCCCC-GCAccaccuGCUGcaCCGAGCG-CAGc -3'
miRNA:   3'- -CGGGGGuCGU------CGACc-GGCUCGUaGUC- -5'
6624 3' -60.9 NC_001847.1 + 98322 0.66 0.665296
Target:  5'- aGCCCCCAGuCGGC-GcGCCGguGGCG-CAc -3'
miRNA:   3'- -CGGGGGUC-GUCGaC-CGGC--UCGUaGUc -5'
6624 3' -60.9 NC_001847.1 + 103945 0.66 0.665296
Target:  5'- cGCCCUCAGCgagAGCaccGUCGAugGCGUCGGc -3'
miRNA:   3'- -CGGGGGUCG---UCGac-CGGCU--CGUAGUC- -5'
6624 3' -60.9 NC_001847.1 + 13709 0.66 0.665296
Target:  5'- --aCCCGGCGGC-GGUCGGGCcgCu- -3'
miRNA:   3'- cggGGGUCGUCGaCCGGCUCGuaGuc -5'
6624 3' -60.9 NC_001847.1 + 19036 0.66 0.665296
Target:  5'- -aCCCCGcCGGCaGGCCcGGCGUCGu -3'
miRNA:   3'- cgGGGGUcGUCGaCCGGcUCGUAGUc -5'
6624 3' -60.9 NC_001847.1 + 37258 0.66 0.665296
Target:  5'- cGUUCCUggAGCAGCacGGCCGgggcGGCGUCGa -3'
miRNA:   3'- -CGGGGG--UCGUCGa-CCGGC----UCGUAGUc -5'
6624 3' -60.9 NC_001847.1 + 20313 0.66 0.663284
Target:  5'- uCgCCUAGCucgugcuugaccaGGCUGGCCugcaauaGGGCAUCGGc -3'
miRNA:   3'- cGgGGGUCG-------------UCGACCGG-------CUCGUAGUC- -5'
6624 3' -60.9 NC_001847.1 + 15991 0.66 0.655232
Target:  5'- cGCCCCgCGGCGGCcgcGGCgccgaCGAGC-UCGc -3'
miRNA:   3'- -CGGGG-GUCGUCGa--CCG-----GCUCGuAGUc -5'
6624 3' -60.9 NC_001847.1 + 113399 0.66 0.655232
Target:  5'- gGCCCCCccGCGcGCgcgGGCCG-GCGcCGGc -3'
miRNA:   3'- -CGGGGGu-CGU-CGa--CCGGCuCGUaGUC- -5'
6624 3' -60.9 NC_001847.1 + 50091 0.66 0.655232
Target:  5'- cGCCCCugaugcucggcCAGCuGCUgggGGCCGGGC-UgGGg -3'
miRNA:   3'- -CGGGG-----------GUCGuCGA---CCGGCUCGuAgUC- -5'
6624 3' -60.9 NC_001847.1 + 104802 0.66 0.655232
Target:  5'- uCCCCgGGCAGCgGGUCguaGAGCAcCAc -3'
miRNA:   3'- cGGGGgUCGUCGaCCGG---CUCGUaGUc -5'
6624 3' -60.9 NC_001847.1 + 30176 0.66 0.655232
Target:  5'- gGCgCUCGGCGGacCUGGCCGAcGCGgugcgCGGc -3'
miRNA:   3'- -CGgGGGUCGUC--GACCGGCU-CGUa----GUC- -5'
6624 3' -60.9 NC_001847.1 + 10586 0.66 0.655232
Target:  5'- gGCCCCCccGCGcGCgcgGGCCG-GCGcCGGc -3'
miRNA:   3'- -CGGGGGu-CGU-CGa--CCGGCuCGUaGUC- -5'
6624 3' -60.9 NC_001847.1 + 36683 0.66 0.655232
Target:  5'- cGCCCCCcgcuggacgagAGCGGCgUGGUgGAGgCGgcuUCGGu -3'
miRNA:   3'- -CGGGGG-----------UCGUCG-ACCGgCUC-GU---AGUC- -5'
6624 3' -60.9 NC_001847.1 + 25802 0.66 0.655232
Target:  5'- gGCCUCgAGCuGCUccgccgcgucGGCCGGGCAg--- -3'
miRNA:   3'- -CGGGGgUCGuCGA----------CCGGCUCGUaguc -5'
6624 3' -60.9 NC_001847.1 + 99982 0.66 0.649184
Target:  5'- uGCCCCCGGCGGUagaaggccacguacuUGG-CGAGCcgaGGc -3'
miRNA:   3'- -CGGGGGUCGUCG---------------ACCgGCUCGuagUC- -5'
6624 3' -60.9 NC_001847.1 + 98176 0.66 0.64515
Target:  5'- cGCUCgCCGGCGcccgcGCUGGCCGcAGCccccgcUCGGc -3'
miRNA:   3'- -CGGG-GGUCGU-----CGACCGGC-UCGu-----AGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.