miRNA display CGI


Results 1 - 20 of 1374 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6627 5' -63.6 NC_001847.1 + 33106 0.66 0.572385
Target:  5'- cCGG-AGCAuGgGCCGgGgGCCCCGuaccuGCg -3'
miRNA:   3'- -GCUgUCGU-CgCGGCgCgCGGGGCu----CG- -5'
6627 5' -63.6 NC_001847.1 + 11568 0.66 0.572385
Target:  5'- gCGGguGCGGCuGCCGCG-GUgCCGGuuGCu -3'
miRNA:   3'- -GCUguCGUCG-CGGCGCgCGgGGCU--CG- -5'
6627 5' -63.6 NC_001847.1 + 104530 0.66 0.572385
Target:  5'- aCGAuCAGC--CGCCGcCGCGCCgCG-GCc -3'
miRNA:   3'- -GCU-GUCGucGCGGC-GCGCGGgGCuCG- -5'
6627 5' -63.6 NC_001847.1 + 77634 0.66 0.572385
Target:  5'- gGACGGC-GCGCCGCcCGUggaggccuucgaCgCGGGCg -3'
miRNA:   3'- gCUGUCGuCGCGGCGcGCG------------GgGCUCG- -5'
6627 5' -63.6 NC_001847.1 + 103840 0.66 0.572385
Target:  5'- -cGCAGCAGaGCC-CGCuCCCCGcGCc -3'
miRNA:   3'- gcUGUCGUCgCGGcGCGcGGGGCuCG- -5'
6627 5' -63.6 NC_001847.1 + 3215 0.66 0.572385
Target:  5'- cCGGC-GCAcGUGCCucCGCGCCgCCGcGGCu -3'
miRNA:   3'- -GCUGuCGU-CGCGGc-GCGCGG-GGC-UCG- -5'
6627 5' -63.6 NC_001847.1 + 72039 0.66 0.572385
Target:  5'- gCGGCGGCGGCcCCgGgGCGUaCCCGGucccGCa -3'
miRNA:   3'- -GCUGUCGUCGcGG-CgCGCG-GGGCU----CG- -5'
6627 5' -63.6 NC_001847.1 + 71500 0.66 0.572385
Target:  5'- uGGCGGCGGUGCgCG-GUGCCUuuCGGGa -3'
miRNA:   3'- gCUGUCGUCGCG-GCgCGCGGG--GCUCg -5'
6627 5' -63.6 NC_001847.1 + 91777 0.66 0.572385
Target:  5'- cCGuCGGCGGCgcugGCCGCGgaCGCUUCGucGGCg -3'
miRNA:   3'- -GCuGUCGUCG----CGGCGC--GCGGGGC--UCG- -5'
6627 5' -63.6 NC_001847.1 + 45816 0.66 0.572385
Target:  5'- cCGGCGGgAGCuGCCGCccGgGCCacucgCUGGGCg -3'
miRNA:   3'- -GCUGUCgUCG-CGGCG--CgCGG-----GGCUCG- -5'
6627 5' -63.6 NC_001847.1 + 39603 0.66 0.572385
Target:  5'- -uGCuGCGGCGCgGCcccaGCCCCagGGGCa -3'
miRNA:   3'- gcUGuCGUCGCGgCGcg--CGGGG--CUCG- -5'
6627 5' -63.6 NC_001847.1 + 125198 0.66 0.572385
Target:  5'- gGGCAGaaGGCGCC-CGgGCCgcggCGAGCg -3'
miRNA:   3'- gCUGUCg-UCGCGGcGCgCGGg---GCUCG- -5'
6627 5' -63.6 NC_001847.1 + 35790 0.66 0.572385
Target:  5'- aCGGCGcGCAucGaCGaCCGCGgGCCCaugGAGCc -3'
miRNA:   3'- -GCUGU-CGU--C-GC-GGCGCgCGGGg--CUCG- -5'
6627 5' -63.6 NC_001847.1 + 55659 0.66 0.572385
Target:  5'- aGACGuGC-GCGCCGCGCuccgGCUCgCGcaGGCg -3'
miRNA:   3'- gCUGU-CGuCGCGGCGCG----CGGG-GC--UCG- -5'
6627 5' -63.6 NC_001847.1 + 131286 0.66 0.572385
Target:  5'- -cGCAGCcccGGCGCCGUcuaCGUCUgGGGCg -3'
miRNA:   3'- gcUGUCG---UCGCGGCGc--GCGGGgCUCG- -5'
6627 5' -63.6 NC_001847.1 + 133733 0.66 0.572385
Target:  5'- -cACcGCGGUGCC-CGUGCCgCCGcGCg -3'
miRNA:   3'- gcUGuCGUCGCGGcGCGCGG-GGCuCG- -5'
6627 5' -63.6 NC_001847.1 + 1717 0.66 0.572385
Target:  5'- aCGAuCAGC--CGCCGcCGCGCCgCG-GCc -3'
miRNA:   3'- -GCU-GUCGucGCGGC-GCGCGGgGCuCG- -5'
6627 5' -63.6 NC_001847.1 + 30395 0.66 0.572385
Target:  5'- -cGCAGaCGGCGCUgGCGCugGCCgCCG-GCa -3'
miRNA:   3'- gcUGUC-GUCGCGG-CGCG--CGG-GGCuCG- -5'
6627 5' -63.6 NC_001847.1 + 111464 0.66 0.572385
Target:  5'- aGACAuauaAGCGCgCGacauCGCGCCCCaAGCc -3'
miRNA:   3'- gCUGUcg--UCGCG-GC----GCGCGGGGcUCG- -5'
6627 5' -63.6 NC_001847.1 + 82666 0.66 0.572385
Target:  5'- -cGCGGC-GCGCCGCGCucguGCUguggucaugagUCGGGCg -3'
miRNA:   3'- gcUGUCGuCGCGGCGCG----CGG-----------GGCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.