miRNA display CGI


Results 1 - 20 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6628 3' -55.5 NC_001847.1 + 2228 0.66 0.870083
Target:  5'- cAGCGCCgc----GGCGCUGgGCGCg -3'
miRNA:   3'- uUCGUGGagaaacUCGCGACgUGCGa -5'
6628 3' -55.5 NC_001847.1 + 28498 0.66 0.870083
Target:  5'- cGGCGCCgccgCU---AGCGC-GCGCGCUu -3'
miRNA:   3'- uUCGUGGa---GAaacUCGCGaCGUGCGA- -5'
6628 3' -55.5 NC_001847.1 + 104310 0.66 0.870083
Target:  5'- cGGCGCCUCg--GGGUagaGCcGCGCGUa -3'
miRNA:   3'- uUCGUGGAGaaaCUCG---CGaCGUGCGa -5'
6628 3' -55.5 NC_001847.1 + 105041 0.66 0.870083
Target:  5'- cAGCGCCgc----GGCGCUGgGCGCg -3'
miRNA:   3'- uUCGUGGagaaacUCGCGACgUGCGa -5'
6628 3' -55.5 NC_001847.1 + 1497 0.66 0.870083
Target:  5'- cGGCGCCUCg--GGGUagaGCcGCGCGUa -3'
miRNA:   3'- uUCGUGGAGaaaCUCG---CGaCGUGCGa -5'
6628 3' -55.5 NC_001847.1 + 80876 0.66 0.865444
Target:  5'- uGAGCGCCUCgagccgcucgucGGGCGCcaccGCAgCGCUg -3'
miRNA:   3'- -UUCGUGGAGaaa---------CUCGCGa---CGU-GCGA- -5'
6628 3' -55.5 NC_001847.1 + 104942 0.66 0.865444
Target:  5'- cAGCGCCUCggggucgaaggcGAGCGCcGgGCGCc -3'
miRNA:   3'- uUCGUGGAGaaa---------CUCGCGaCgUGCGa -5'
6628 3' -55.5 NC_001847.1 + 2129 0.66 0.865444
Target:  5'- cAGCGCCUCggggucgaaggcGAGCGCcGgGCGCc -3'
miRNA:   3'- uUCGUGGAGaaa---------CUCGCGaCgUGCGa -5'
6628 3' -55.5 NC_001847.1 + 14650 0.66 0.862305
Target:  5'- -cGCGCCgcucgCUgcGAGCGggGCGCGUg -3'
miRNA:   3'- uuCGUGGa----GAaaCUCGCgaCGUGCGa -5'
6628 3' -55.5 NC_001847.1 + 48481 0.66 0.862305
Target:  5'- aAAGCGCggguc-GAGCGCgGCGCGCUc -3'
miRNA:   3'- -UUCGUGgagaaaCUCGCGaCGUGCGA- -5'
6628 3' -55.5 NC_001847.1 + 48845 0.66 0.862305
Target:  5'- gGGGCGCCUCggcc-GCGCgGCGCGa- -3'
miRNA:   3'- -UUCGUGGAGaaacuCGCGaCGUGCga -5'
6628 3' -55.5 NC_001847.1 + 121064 0.66 0.862305
Target:  5'- uAGUGCCUCUgugcgUGcuGGUGCUGC-UGCUg -3'
miRNA:   3'- uUCGUGGAGAa----AC--UCGCGACGuGCGA- -5'
6628 3' -55.5 NC_001847.1 + 89816 0.66 0.862305
Target:  5'- uGGCACCgccgugGAGCGCgcgGCcaACGCg -3'
miRNA:   3'- uUCGUGGagaaa-CUCGCGa--CG--UGCGa -5'
6628 3' -55.5 NC_001847.1 + 117415 0.66 0.862305
Target:  5'- uGGcCGCCUCguacgccGAGcCGCUGUACGUg -3'
miRNA:   3'- uUC-GUGGAGaaa----CUC-GCGACGUGCGa -5'
6628 3' -55.5 NC_001847.1 + 5193 0.66 0.862305
Target:  5'- cAGCGCCgc---GAGCGCggcaaGCGCGCc -3'
miRNA:   3'- uUCGUGGagaaaCUCGCGa----CGUGCGa -5'
6628 3' -55.5 NC_001847.1 + 30787 0.66 0.854303
Target:  5'- cGGCGCgUCUUcggcccGGGCGCcuucGCGCGCg -3'
miRNA:   3'- uUCGUGgAGAAa-----CUCGCGa---CGUGCGa -5'
6628 3' -55.5 NC_001847.1 + 79472 0.66 0.854303
Target:  5'- cGGcCGCCUgCgcgagccgGAGCGCgGCGCGCa -3'
miRNA:   3'- uUC-GUGGA-Gaaa-----CUCGCGaCGUGCGa -5'
6628 3' -55.5 NC_001847.1 + 49876 0.66 0.854303
Target:  5'- -cGCA-CUCUgcGAGCuGCUGCACGg- -3'
miRNA:   3'- uuCGUgGAGAaaCUCG-CGACGUGCga -5'
6628 3' -55.5 NC_001847.1 + 35819 0.66 0.854303
Target:  5'- gGAGC-CCUUUgcgGAGCGCaucGaCGCGCUg -3'
miRNA:   3'- -UUCGuGGAGAaa-CUCGCGa--C-GUGCGA- -5'
6628 3' -55.5 NC_001847.1 + 133600 0.66 0.854303
Target:  5'- cGGCGCgUCUUcggcccGGGCGCcuucGCGCGCg -3'
miRNA:   3'- uUCGUGgAGAAa-----CUCGCGa---CGUGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.