miRNA display CGI


Results 1 - 20 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6628 5' -54.8 NC_001847.1 + 129659 0.66 0.929395
Target:  5'- uCGAgguuGCGGCGGCCgcuGCcgCCgCCGCa -3'
miRNA:   3'- -GCU----CGCUGUCGGaguUGuaGGaGGUG- -5'
6628 5' -54.8 NC_001847.1 + 85307 0.66 0.929395
Target:  5'- aGcAGC-ACGGCCgccugCAGCGUCCaggCCGCc -3'
miRNA:   3'- gC-UCGcUGUCGGa----GUUGUAGGa--GGUG- -5'
6628 5' -54.8 NC_001847.1 + 34366 0.66 0.929395
Target:  5'- gCGGGCGcugauGCGGCCgaaaCAACGgcggCCgccgCCGCg -3'
miRNA:   3'- -GCUCGC-----UGUCGGa---GUUGUa---GGa---GGUG- -5'
6628 5' -54.8 NC_001847.1 + 44730 0.66 0.929395
Target:  5'- aGGGCG-CcGCCUCGugGcCCgCCACa -3'
miRNA:   3'- gCUCGCuGuCGGAGUugUaGGaGGUG- -5'
6628 5' -54.8 NC_001847.1 + 44897 0.66 0.929395
Target:  5'- aCGAGCGcgucACAGCCgCGGCGgcggCCGCg -3'
miRNA:   3'- -GCUCGC----UGUCGGaGUUGUaggaGGUG- -5'
6628 5' -54.8 NC_001847.1 + 71473 0.66 0.929395
Target:  5'- gGGGCauGGCGGCCgcgagCAugaGCAgaUCUUCCGCg -3'
miRNA:   3'- gCUCG--CUGUCGGa----GU---UGU--AGGAGGUG- -5'
6628 5' -54.8 NC_001847.1 + 80250 0.66 0.929395
Target:  5'- cCGGGuCGACGGCgugccgCAGCAgggCCUCCu- -3'
miRNA:   3'- -GCUC-GCUGUCGga----GUUGUa--GGAGGug -5'
6628 5' -54.8 NC_001847.1 + 88945 0.66 0.929395
Target:  5'- -cGGCGGCGGCCgccgcCGGCcgCUaCCGCg -3'
miRNA:   3'- gcUCGCUGUCGGa----GUUGuaGGaGGUG- -5'
6628 5' -54.8 NC_001847.1 + 104930 0.66 0.929395
Target:  5'- cCGGGCGcgcGCGGCUUCGGCG-CgCgcgCCGCg -3'
miRNA:   3'- -GCUCGC---UGUCGGAGUUGUaG-Ga--GGUG- -5'
6628 5' -54.8 NC_001847.1 + 78689 0.66 0.926162
Target:  5'- gCGGGCGcuGguGCCgggCAGCAcgcgagugcgggcggUCUUCCGCg -3'
miRNA:   3'- -GCUCGC--UguCGGa--GUUGU---------------AGGAGGUG- -5'
6628 5' -54.8 NC_001847.1 + 105515 0.66 0.923958
Target:  5'- cCGcGGCGcccCGGcCCUC-AUGUCCUCCACc -3'
miRNA:   3'- -GC-UCGCu--GUC-GGAGuUGUAGGAGGUG- -5'
6628 5' -54.8 NC_001847.1 + 24685 0.66 0.923958
Target:  5'- aCGGGC-ACGGUCUCGACGccuagccCCUCgCGCu -3'
miRNA:   3'- -GCUCGcUGUCGGAGUUGUa------GGAG-GUG- -5'
6628 5' -54.8 NC_001847.1 + 70251 0.66 0.923958
Target:  5'- gCGGGCGGCGGgCgcgCGGCGUugcUCUCgGCg -3'
miRNA:   3'- -GCUCGCUGUCgGa--GUUGUA---GGAGgUG- -5'
6628 5' -54.8 NC_001847.1 + 104345 0.66 0.923958
Target:  5'- cCGcGGCGGCAGaCgcggCGGCGUCCgcgcCCGCa -3'
miRNA:   3'- -GC-UCGCUGUCgGa---GUUGUAGGa---GGUG- -5'
6628 5' -54.8 NC_001847.1 + 2702 0.66 0.923958
Target:  5'- cCGcGGCGcccCGGcCCUC-AUGUCCUCCACc -3'
miRNA:   3'- -GC-UCGCu--GUC-GGAGuUGUAGGAGGUG- -5'
6628 5' -54.8 NC_001847.1 + 115995 0.66 0.923958
Target:  5'- aCGGGCG-CGGCCgcugccuACGUCgUCUGCg -3'
miRNA:   3'- -GCUCGCuGUCGGagu----UGUAGgAGGUG- -5'
6628 5' -54.8 NC_001847.1 + 12379 0.66 0.918852
Target:  5'- gGAGCGcACGGCCcggaccguguaugcgCAGCAguuUCCcCCGCg -3'
miRNA:   3'- gCUCGC-UGUCGGa--------------GUUGU---AGGaGGUG- -5'
6628 5' -54.8 NC_001847.1 + 84770 0.66 0.918272
Target:  5'- -cGGCGGCGGCgccgucCUUAGCGUCggCCGCg -3'
miRNA:   3'- gcUCGCUGUCG------GAGUUGUAGgaGGUG- -5'
6628 5' -54.8 NC_001847.1 + 82557 0.66 0.918272
Target:  5'- gCGGGCu-CGGCCUCGGCcgCCgCCuCg -3'
miRNA:   3'- -GCUCGcuGUCGGAGUUGuaGGaGGuG- -5'
6628 5' -54.8 NC_001847.1 + 43465 0.66 0.918272
Target:  5'- gGAGCcGCAGCCgCAGCcgcagCCgcagCCGCg -3'
miRNA:   3'- gCUCGcUGUCGGaGUUGua---GGa---GGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.