miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6630 3' -52.3 NC_001847.1 + 85749 0.66 0.981978
Target:  5'- cGGAGcccgccauGACGGCaACGCCGGGggcaGCg -3'
miRNA:   3'- -CCUCau------CUGUUGcUGUGGCCCaa--CGa -5'
6630 3' -52.3 NC_001847.1 + 35710 0.66 0.981978
Target:  5'- uGGAGgAGGCGccggagcuggACGugGCCGcGGUggagugGCUg -3'
miRNA:   3'- -CCUCaUCUGU----------UGCugUGGC-CCAa-----CGA- -5'
6630 3' -52.3 NC_001847.1 + 54568 0.66 0.98177
Target:  5'- cGGA--GGACGACGGCcccgcggGCUGGGcgGCg -3'
miRNA:   3'- -CCUcaUCUGUUGCUG-------UGGCCCaaCGa -5'
6630 3' -52.3 NC_001847.1 + 124721 0.66 0.979819
Target:  5'- cGGGGgcGGCAGCGcgaaccGCGCgGGGgaggGCc -3'
miRNA:   3'- -CCUCauCUGUUGC------UGUGgCCCaa--CGa -5'
6630 3' -52.3 NC_001847.1 + 96340 0.66 0.979819
Target:  5'- cGGGGccGGCGGCGGCAauggCGGGgccgGCg -3'
miRNA:   3'- -CCUCauCUGUUGCUGUg---GCCCaa--CGa -5'
6630 3' -52.3 NC_001847.1 + 96382 0.66 0.979819
Target:  5'- cGGGGccGGCGGCGGCAauggCGGGgccgGCg -3'
miRNA:   3'- -CCUCauCUGUUGCUGUg---GCCCaa--CGa -5'
6630 3' -52.3 NC_001847.1 + 96298 0.66 0.979819
Target:  5'- cGGGGccGGCGGCGGCAauggCGGGgccgGCg -3'
miRNA:   3'- -CCUCauCUGUUGCUGUg---GCCCaa--CGa -5'
6630 3' -52.3 NC_001847.1 + 34509 0.66 0.979819
Target:  5'- cGAGgccGACGcggACGGCGCCGGcGaUGCg -3'
miRNA:   3'- cCUCau-CUGU---UGCUGUGGCC-CaACGa -5'
6630 3' -52.3 NC_001847.1 + 126675 0.66 0.979593
Target:  5'- -----cGACGAgGACGCCGGGUacgauauUGCc -3'
miRNA:   3'- ccucauCUGUUgCUGUGGCCCA-------ACGa -5'
6630 3' -52.3 NC_001847.1 + 17893 0.66 0.978435
Target:  5'- cGGGGcGGGCGGCGGCgugcuguugguaacgGgCGGGUcgUGCUc -3'
miRNA:   3'- -CCUCaUCUGUUGCUG---------------UgGCCCA--ACGA- -5'
6630 3' -52.3 NC_001847.1 + 50830 0.66 0.977474
Target:  5'- cGGGG-GGGCGcUGcccGCGCCGGGggGCg -3'
miRNA:   3'- -CCUCaUCUGUuGC---UGUGGCCCaaCGa -5'
6630 3' -52.3 NC_001847.1 + 81229 0.66 0.977474
Target:  5'- --cGgcGGCAGCGGCGgCGGGccagGCUg -3'
miRNA:   3'- ccuCauCUGUUGCUGUgGCCCaa--CGA- -5'
6630 3' -52.3 NC_001847.1 + 61856 0.66 0.977229
Target:  5'- cGGcGUAGGCcGCGccugccgGCGCCcgcggGGGUUGCa -3'
miRNA:   3'- -CCuCAUCUGuUGC-------UGUGG-----CCCAACGa -5'
6630 3' -52.3 NC_001847.1 + 68231 0.66 0.974935
Target:  5'- gGGGGaGGGCAACGcgcgcgcuaaaACACCGGGa---- -3'
miRNA:   3'- -CCUCaUCUGUUGC-----------UGUGGCCCaacga -5'
6630 3' -52.3 NC_001847.1 + 105327 0.66 0.974935
Target:  5'- cGGAccugcGUcGuCGugGGCGCCGGGgcGCUc -3'
miRNA:   3'- -CCU-----CAuCuGUugCUGUGGCCCaaCGA- -5'
6630 3' -52.3 NC_001847.1 + 33855 0.66 0.974935
Target:  5'- gGGAG-AGACcGCGG-GCUGGGggGCg -3'
miRNA:   3'- -CCUCaUCUGuUGCUgUGGCCCaaCGa -5'
6630 3' -52.3 NC_001847.1 + 12633 0.66 0.974935
Target:  5'- uGGAGgcGGCcgcuGCGGCugCGGGggagaggaGCg -3'
miRNA:   3'- -CCUCauCUGu---UGCUGugGCCCaa------CGa -5'
6630 3' -52.3 NC_001847.1 + 42421 0.66 0.974935
Target:  5'- -----uGACGACGGCGCCGGuGgcgGCg -3'
miRNA:   3'- ccucauCUGUUGCUGUGGCC-Caa-CGa -5'
6630 3' -52.3 NC_001847.1 + 3970 0.66 0.972192
Target:  5'- --cGgcGGCGAgGGCGCCGGGggccggGCg -3'
miRNA:   3'- ccuCauCUGUUgCUGUGGCCCaa----CGa -5'
6630 3' -52.3 NC_001847.1 + 69676 0.66 0.972192
Target:  5'- -uGGUAGGCAGCGuuggGCGCgGGGccgGCg -3'
miRNA:   3'- ccUCAUCUGUUGC----UGUGgCCCaa-CGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.