miRNA display CGI


Results 1 - 20 of 590 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6630 5' -63.7 NC_001847.1 + 23727 0.66 0.604745
Target:  5'- --cGCCCCcggCCGAgcGCCGCCccuGGCGgGGc -3'
miRNA:   3'- ccuCGGGG---GGCUa-CGGCGG---CUGCgCC- -5'
6630 5' -63.7 NC_001847.1 + 21735 0.66 0.604745
Target:  5'- uGuuCCCCCCGAcgcuacgcUGCCGC-GACGUGc -3'
miRNA:   3'- cCucGGGGGGCU--------ACGGCGgCUGCGCc -5'
6630 5' -63.7 NC_001847.1 + 126540 0.66 0.604745
Target:  5'- --cGCCCCcggCCGAgcGCCGCCccuGGCGgGGc -3'
miRNA:   3'- ccuCGGGG---GGCUa-CGGCGG---CUGCgCC- -5'
6630 5' -63.7 NC_001847.1 + 92399 0.66 0.604745
Target:  5'- uGGAucuGCUgUCCGccccGCCGCCcGCGCGGc -3'
miRNA:   3'- -CCU---CGGgGGGCua--CGGCGGcUGCGCC- -5'
6630 5' -63.7 NC_001847.1 + 28092 0.66 0.604745
Target:  5'- uGGcGCCUgCCCGggGCCGC--GCGCGa -3'
miRNA:   3'- -CCuCGGG-GGGCuaCGGCGgcUGCGCc -5'
6630 5' -63.7 NC_001847.1 + 67648 0.66 0.604745
Target:  5'- cGuGCCCUcgUCGAgggGCgCGgCGGCGCGGu -3'
miRNA:   3'- cCuCGGGG--GGCUa--CG-GCgGCUGCGCC- -5'
6630 5' -63.7 NC_001847.1 + 102978 0.66 0.604745
Target:  5'- -aAGCUCCgCCGc-GCaCGCCGuCGCGGc -3'
miRNA:   3'- ccUCGGGG-GGCuaCG-GCGGCuGCGCC- -5'
6630 5' -63.7 NC_001847.1 + 13920 0.66 0.604745
Target:  5'- uGGGGCg-CUCGGUGCCGC-GcCGCGGc -3'
miRNA:   3'- -CCUCGggGGGCUACGGCGgCuGCGCC- -5'
6630 5' -63.7 NC_001847.1 + 38800 0.66 0.604745
Target:  5'- -cGGCCCCgCCauUGCCGCCG-C-CGGc -3'
miRNA:   3'- ccUCGGGG-GGcuACGGCGGCuGcGCC- -5'
6630 5' -63.7 NC_001847.1 + 38887 0.66 0.604745
Target:  5'- -cGGCCCCgCCauUGCCGCCG-C-CGGc -3'
miRNA:   3'- ccUCGGGG-GGcuACGGCGGCuGcGCC- -5'
6630 5' -63.7 NC_001847.1 + 8896 0.66 0.604745
Target:  5'- cGGAcGCCCCgCCGAcGaccccggacgccCCGCCGACGa-- -3'
miRNA:   3'- -CCU-CGGGG-GGCUaC------------GGCGGCUGCgcc -5'
6630 5' -63.7 NC_001847.1 + 87251 0.66 0.604745
Target:  5'- cGGcuGCgCCCCGG-GCgCGCgGGCGCGc -3'
miRNA:   3'- -CCu-CGgGGGGCUaCG-GCGgCUGCGCc -5'
6630 5' -63.7 NC_001847.1 + 38842 0.66 0.604745
Target:  5'- -cGGCCCCgCCauUGCCGCCG-C-CGGc -3'
miRNA:   3'- ccUCGGGG-GGcuACGGCGGCuGcGCC- -5'
6630 5' -63.7 NC_001847.1 + 72405 0.66 0.604745
Target:  5'- cGGGCCCCgacgCGGggacgGCCacgGCCGcaACGCGGa -3'
miRNA:   3'- cCUCGGGGg---GCUa----CGG---CGGC--UGCGCC- -5'
6630 5' -63.7 NC_001847.1 + 1556 0.66 0.604745
Target:  5'- --cGCCCgCCCGAUaGCgCGCCcGCGCc- -3'
miRNA:   3'- ccuCGGG-GGGCUA-CG-GCGGcUGCGcc -5'
6630 5' -63.7 NC_001847.1 + 100865 0.66 0.604745
Target:  5'- -cGGCCCgCCGGgggucgGCgGCaggGGCGCGGc -3'
miRNA:   3'- ccUCGGGgGGCUa-----CGgCGg--CUGCGCC- -5'
6630 5' -63.7 NC_001847.1 + 111709 0.66 0.604745
Target:  5'- cGGAcGCCCCgCCGAcGaccccggacgccCCGCCGACGa-- -3'
miRNA:   3'- -CCU-CGGGG-GGCUaC------------GGCGGCUGCgcc -5'
6630 5' -63.7 NC_001847.1 + 85028 0.66 0.604745
Target:  5'- cGAGgCCagCCGGcgcucuacGCCGcCCGGCGCGGc -3'
miRNA:   3'- cCUCgGGg-GGCUa-------CGGC-GGCUGCGCC- -5'
6630 5' -63.7 NC_001847.1 + 123764 0.66 0.604745
Target:  5'- uGGAGUCgUCCCGuaguUGaucgCGCCG-CGCGGc -3'
miRNA:   3'- -CCUCGG-GGGGCu---ACg---GCGGCuGCGCC- -5'
6630 5' -63.7 NC_001847.1 + 98825 0.66 0.604745
Target:  5'- aGGAcGCaCCCUCGcgGCgGCgGugGCa- -3'
miRNA:   3'- -CCU-CG-GGGGGCuaCGgCGgCugCGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.