miRNA display CGI


Results 21 - 40 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6631 3' -53.1 NC_001847.1 + 10255 0.67 0.929152
Target:  5'- -----gGGCCCGCUUUUcggaGCCGAGUg- -3'
miRNA:   3'- uuucugCCGGGCGAAGA----UGGCUUAga -5'
6631 3' -53.1 NC_001847.1 + 61952 0.67 0.923602
Target:  5'- ---cGCGGCCCGCgcggGCCGAcUCc -3'
miRNA:   3'- uuucUGCCGGGCGaagaUGGCUuAGa -5'
6631 3' -53.1 NC_001847.1 + 129304 0.67 0.917794
Target:  5'- -cAGGCGGCUCGCUUCgGgUGggUgCUg -3'
miRNA:   3'- uuUCUGCCGGGCGAAGaUgGCuuA-GA- -5'
6631 3' -53.1 NC_001847.1 + 53424 0.67 0.911729
Target:  5'- gGAGGGCGcGUgCCGCUUCcACCGGcgCg -3'
miRNA:   3'- -UUUCUGC-CG-GGCGAAGaUGGCUuaGa -5'
6631 3' -53.1 NC_001847.1 + 43821 0.68 0.905409
Target:  5'- --cGACGGCggCCGCUUCUuuGCCGcg-CUg -3'
miRNA:   3'- uuuCUGCCG--GGCGAAGA--UGGCuuaGA- -5'
6631 3' -53.1 NC_001847.1 + 10610 0.68 0.898835
Target:  5'- --cGcCGGCCCGCgccCUGCUGGcgCUg -3'
miRNA:   3'- uuuCuGCCGGGCGaa-GAUGGCUuaGA- -5'
6631 3' -53.1 NC_001847.1 + 113423 0.68 0.898835
Target:  5'- --cGcCGGCCCGCgccCUGCUGGcgCUg -3'
miRNA:   3'- uuuCuGCCGGGCGaa-GAUGGCUuaGA- -5'
6631 3' -53.1 NC_001847.1 + 20729 0.68 0.884221
Target:  5'- --uGGCGGaCCGCUUCUACCucaacgccgacguGGAUCc -3'
miRNA:   3'- uuuCUGCCgGGCGAAGAUGG-------------CUUAGa -5'
6631 3' -53.1 NC_001847.1 + 33073 0.68 0.883499
Target:  5'- ---cGCGGCCCGCgccugcccuugCUGCCGAAc-- -3'
miRNA:   3'- uuucUGCCGGGCGaa---------GAUGGCUUaga -5'
6631 3' -53.1 NC_001847.1 + 114397 0.69 0.870083
Target:  5'- cGAAGGCgaGGCCCGCcUC-ACCGccGGUCUg -3'
miRNA:   3'- -UUUCUG--CCGGGCGaAGaUGGC--UUAGA- -5'
6631 3' -53.1 NC_001847.1 + 18500 0.69 0.870083
Target:  5'- ---aGCGuGCCCGCggCUGCCGAGg-- -3'
miRNA:   3'- uuucUGC-CGGGCGaaGAUGGCUUaga -5'
6631 3' -53.1 NC_001847.1 + 131480 0.69 0.862305
Target:  5'- --cGGCGGCCUGCUggcauggCUGCUGuacGUCg -3'
miRNA:   3'- uuuCUGCCGGGCGAa------GAUGGCu--UAGa -5'
6631 3' -53.1 NC_001847.1 + 113781 0.69 0.837655
Target:  5'- cGAGGCGGCCCGag-CcGCCGAcggcgcgcaucGUCUg -3'
miRNA:   3'- uUUCUGCCGGGCgaaGaUGGCU-----------UAGA- -5'
6631 3' -53.1 NC_001847.1 + 47415 0.69 0.837655
Target:  5'- -uAGACGGCCgugaGCUUCU-CCGAGa-- -3'
miRNA:   3'- uuUCUGCCGGg---CGAAGAuGGCUUaga -5'
6631 3' -53.1 NC_001847.1 + 40843 0.69 0.837655
Target:  5'- gGAGGAaGGUCCGCUUCaguCCGAuuGUCg -3'
miRNA:   3'- -UUUCUgCCGGGCGAAGau-GGCU--UAGa -5'
6631 3' -53.1 NC_001847.1 + 36592 0.7 0.829025
Target:  5'- --cGACGGCacgCCGCUcugCUACCGggUg- -3'
miRNA:   3'- uuuCUGCCG---GGCGAa--GAUGGCuuAga -5'
6631 3' -53.1 NC_001847.1 + 70787 0.7 0.811192
Target:  5'- --uGGCGGCUCGCUUCgcggcgggGCCGGGa-- -3'
miRNA:   3'- uuuCUGCCGGGCGAAGa-------UGGCUUaga -5'
6631 3' -53.1 NC_001847.1 + 87291 0.7 0.811192
Target:  5'- --cGACGGCCCGCggCcgcgGCCGAu--- -3'
miRNA:   3'- uuuCUGCCGGGCGaaGa---UGGCUuaga -5'
6631 3' -53.1 NC_001847.1 + 21892 0.7 0.792659
Target:  5'- cGAGGcCGaGCCCGCgaCUACCGAgacggaGUCUg -3'
miRNA:   3'- -UUUCuGC-CGGGCGaaGAUGGCU------UAGA- -5'
6631 3' -53.1 NC_001847.1 + 97866 0.71 0.773501
Target:  5'- gAAAGGCGGCCCGCgucccagUCggcgGCgCGGAUg- -3'
miRNA:   3'- -UUUCUGCCGGGCGa------AGa---UG-GCUUAga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.