miRNA display CGI


Results 1 - 20 of 749 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6631 5' -66.3 NC_001847.1 + 49548 0.66 0.474191
Target:  5'- gCGGCCauaguuaauuacaaUgCGCGGAaccucucggccgacGGCGGcGCCuGGGCg -3'
miRNA:   3'- gGUCGG--------------GgGCGCCU--------------UCGCC-CGG-CCCG- -5'
6631 5' -66.3 NC_001847.1 + 64155 0.66 0.474191
Target:  5'- gCGGCCCgCCaugcaggccgcuugcGCGGAcggggcGGCGGGCgCGacgcuGGCg -3'
miRNA:   3'- gGUCGGG-GG---------------CGCCU------UCGCCCG-GC-----CCG- -5'
6631 5' -66.3 NC_001847.1 + 4841 0.66 0.474191
Target:  5'- gUCGGCCggCCGUcaaaacgcaggggagGGggGgGGGCggCGGGCa -3'
miRNA:   3'- -GGUCGGg-GGCG---------------CCuuCgCCCG--GCCCG- -5'
6631 5' -66.3 NC_001847.1 + 107654 0.66 0.474191
Target:  5'- gUCGGCCggCCGUcaaaacgcaggggagGGggGgGGGCggCGGGCa -3'
miRNA:   3'- -GGUCGGg-GGCG---------------CCuuCgCCCG--GCCCG- -5'
6631 5' -66.3 NC_001847.1 + 89310 0.66 0.470687
Target:  5'- gCCGuGCCgCCCaGCG--AGUGGcCCGGGCg -3'
miRNA:   3'- -GGU-CGG-GGG-CGCcuUCGCCcGGCCCG- -5'
6631 5' -66.3 NC_001847.1 + 52653 0.66 0.470687
Target:  5'- -uGGCCgCCCGCacGGccGCGGGCuCGucccacGGCa -3'
miRNA:   3'- ggUCGG-GGGCG--CCuuCGCCCG-GC------CCG- -5'
6631 5' -66.3 NC_001847.1 + 102308 0.66 0.470687
Target:  5'- gCGGUCUCgGCGGccacGCGGGCCucGCg -3'
miRNA:   3'- gGUCGGGGgCGCCuu--CGCCCGGccCG- -5'
6631 5' -66.3 NC_001847.1 + 124729 0.66 0.470687
Target:  5'- gCAGCgcgaaCCgCGCGGggGaGGGCCGucauaaagcGGCc -3'
miRNA:   3'- gGUCGg----GG-GCGCCuuCgCCCGGC---------CCG- -5'
6631 5' -66.3 NC_001847.1 + 123888 0.66 0.470687
Target:  5'- cCCAGCgCCCGCGGcAAGCuucCCGaaaacGGCg -3'
miRNA:   3'- -GGUCGgGGGCGCC-UUCGcccGGC-----CCG- -5'
6631 5' -66.3 NC_001847.1 + 3269 0.66 0.470687
Target:  5'- gCCGGCgCCgCGCGGccGGCGaGCaCGGcGCg -3'
miRNA:   3'- -GGUCGgGG-GCGCCu-UCGCcCG-GCC-CG- -5'
6631 5' -66.3 NC_001847.1 + 11242 0.66 0.470687
Target:  5'- -gAGCCgCCGUuuucgGGAAGCuugccgcgGGcGCUGGGCu -3'
miRNA:   3'- ggUCGGgGGCG-----CCUUCG--------CC-CGGCCCG- -5'
6631 5' -66.3 NC_001847.1 + 80609 0.66 0.470687
Target:  5'- cCCcGCCCCCGCccccGccGCGGuuGCCGauGGCg -3'
miRNA:   3'- -GGuCGGGGGCGc---CuuCGCC--CGGC--CCG- -5'
6631 5' -66.3 NC_001847.1 + 100609 0.66 0.470687
Target:  5'- cCCaAGCgCCCgGCGGGcGGCGcaucGCCGGcGCc -3'
miRNA:   3'- -GG-UCG-GGGgCGCCU-UCGCc---CGGCC-CG- -5'
6631 5' -66.3 NC_001847.1 + 99137 0.66 0.470687
Target:  5'- cCCAGCaccacgCCCGCGGccgccugcAGCGcGGCUGcGCg -3'
miRNA:   3'- -GGUCGg-----GGGCGCCu-------UCGC-CCGGCcCG- -5'
6631 5' -66.3 NC_001847.1 + 19315 0.66 0.470687
Target:  5'- gCGGCCgcggCCGUGGcuguuaacgcAAGCGccgcGGCCGGGUc -3'
miRNA:   3'- gGUCGGg---GGCGCC----------UUCGC----CCGGCCCG- -5'
6631 5' -66.3 NC_001847.1 + 100136 0.66 0.470687
Target:  5'- gCUGGCCCacguCCGCGGccGGGaagaGGGCCgacagcgcggGGGCc -3'
miRNA:   3'- -GGUCGGG----GGCGCC--UUCg---CCCGG----------CCCG- -5'
6631 5' -66.3 NC_001847.1 + 100348 0.66 0.470687
Target:  5'- gCCAGCggCCGCGGGucguagccGCGcgccgcGGCCGcGGCg -3'
miRNA:   3'- -GGUCGggGGCGCCUu-------CGC------CCGGC-CCG- -5'
6631 5' -66.3 NC_001847.1 + 51375 0.66 0.470687
Target:  5'- aCGGUgaCgCUCGCGGAGGcCGcGGUCGcGGCg -3'
miRNA:   3'- gGUCG--G-GGGCGCCUUC-GC-CCGGC-CCG- -5'
6631 5' -66.3 NC_001847.1 + 106082 0.66 0.470687
Target:  5'- gCCGGCgCCgCGCGGccGGCGaGCaCGGcGCg -3'
miRNA:   3'- -GGUCGgGG-GCGCCu-UCGCcCG-GCC-CG- -5'
6631 5' -66.3 NC_001847.1 + 78319 0.66 0.470687
Target:  5'- gCGGCgCgCGCGcc-GCGGGCCcGGCu -3'
miRNA:   3'- gGUCGgGgGCGCcuuCGCCCGGcCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.