miRNA display CGI


Results 21 - 40 of 521 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6632 3' -65.5 NC_001847.1 + 89929 0.66 0.474678
Target:  5'- aGGCcGCGCUCgcGGCGGCgCUCGCg- -3'
miRNA:   3'- cUUGcCGCGGGa-CCGCCGgGAGCGgc -5'
6632 3' -65.5 NC_001847.1 + 14507 0.66 0.474678
Target:  5'- -cGCGGCcaagggaaagacGUCUcGGCGGCgCUCGCUGc -3'
miRNA:   3'- cuUGCCG------------CGGGaCCGCCGgGAGCGGC- -5'
6632 3' -65.5 NC_001847.1 + 98971 0.66 0.474678
Target:  5'- -cACGGCGUaggGGuUGGCCCaguacgucUCGCCGg -3'
miRNA:   3'- cuUGCCGCGggaCC-GCCGGG--------AGCGGC- -5'
6632 3' -65.5 NC_001847.1 + 125391 0.66 0.474678
Target:  5'- aAGCgGGCGCCCcggGGCaGGgCC-CGCCc -3'
miRNA:   3'- cUUG-CCGCGGGa--CCG-CCgGGaGCGGc -5'
6632 3' -65.5 NC_001847.1 + 99642 0.66 0.471119
Target:  5'- cGGCGcGCGCCgUGGCcuccgcgcgcgccGCCUUUGCCGc -3'
miRNA:   3'- cUUGC-CGCGGgACCGc------------CGGGAGCGGC- -5'
6632 3' -65.5 NC_001847.1 + 59321 0.66 0.465806
Target:  5'- -cGCGGCGCC--GGCGGCgCCguaccaGCCc -3'
miRNA:   3'- cuUGCCGCGGgaCCGCCG-GGag----CGGc -5'
6632 3' -65.5 NC_001847.1 + 89321 0.66 0.465806
Target:  5'- cAGCGaGUgGCCCgGGCGGCagcuCC-CGCCGg -3'
miRNA:   3'- cUUGC-CG-CGGGaCCGCCG----GGaGCGGC- -5'
6632 3' -65.5 NC_001847.1 + 124407 0.66 0.465806
Target:  5'- -cGCGGggcccCGCCCcccuaaacucgcUGGCGGCgCUUgGCCGg -3'
miRNA:   3'- cuUGCC-----GCGGG------------ACCGCCG-GGAgCGGC- -5'
6632 3' -65.5 NC_001847.1 + 32383 0.66 0.465806
Target:  5'- aGAACGGCGCgCgcacGCGGCaCgaCGCCc -3'
miRNA:   3'- -CUUGCCGCGgGac--CGCCG-GgaGCGGc -5'
6632 3' -65.5 NC_001847.1 + 21594 0.66 0.465806
Target:  5'- -cGCGGggcccCGCCCcccuaaacucgcUGGCGGCgCUUgGCCGg -3'
miRNA:   3'- cuUGCC-----GCGGG------------ACCGCCG-GGAgCGGC- -5'
6632 3' -65.5 NC_001847.1 + 32005 0.66 0.465806
Target:  5'- aGGACcuucGCGCgCC-GGCGGCCCgCGCUc -3'
miRNA:   3'- -CUUGc---CGCG-GGaCCGCCGGGaGCGGc -5'
6632 3' -65.5 NC_001847.1 + 2081 0.66 0.465806
Target:  5'- cGGCGaGCGCCCcGcGgGGCCCgcgCGgCGg -3'
miRNA:   3'- cUUGC-CGCGGGaC-CgCCGGGa--GCgGC- -5'
6632 3' -65.5 NC_001847.1 + 72663 0.66 0.465806
Target:  5'- -cGCGGcCGCCCgccGGCgaccccGGCCCU-GCUGa -3'
miRNA:   3'- cuUGCC-GCGGGa--CCG------CCGGGAgCGGC- -5'
6632 3' -65.5 NC_001847.1 + 2331 0.66 0.465806
Target:  5'- cGGGCGG-GCagcGGCGGCUCcCGCCGc -3'
miRNA:   3'- -CUUGCCgCGggaCCGCCGGGaGCGGC- -5'
6632 3' -65.5 NC_001847.1 + 104894 0.66 0.465806
Target:  5'- cGGCGaGCGCCCcGcGgGGCCCgcgCGgCGg -3'
miRNA:   3'- cUUGC-CGCGGGaC-CgCCGGGa--GCgGC- -5'
6632 3' -65.5 NC_001847.1 + 15245 0.66 0.465806
Target:  5'- cGGCGGCGgC--GGCGGCCacgcacgcgaUCGCCGc -3'
miRNA:   3'- cUUGCCGCgGgaCCGCCGGg---------AGCGGC- -5'
6632 3' -65.5 NC_001847.1 + 36486 0.66 0.465806
Target:  5'- --cCGGCuucgGCCCcGGCuucGGCCCaaacgCGCCGa -3'
miRNA:   3'- cuuGCCG----CGGGaCCG---CCGGGa----GCGGC- -5'
6632 3' -65.5 NC_001847.1 + 28908 0.66 0.465806
Target:  5'- --gUGGCGgCCUGcGUGGCCaugagcCGCCGc -3'
miRNA:   3'- cuuGCCGCgGGAC-CGCCGGga----GCGGC- -5'
6632 3' -65.5 NC_001847.1 + 108776 0.66 0.465806
Target:  5'- cGGAC-GCGCCg-GGCGGCCCaC-CCGg -3'
miRNA:   3'- -CUUGcCGCGGgaCCGCCGGGaGcGGC- -5'
6632 3' -65.5 NC_001847.1 + 9931 0.66 0.465806
Target:  5'- cGGACGaGCacGCUCgccGCGGCCCgggCGCCu -3'
miRNA:   3'- -CUUGC-CG--CGGGac-CGCCGGGa--GCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.