miRNA display CGI


Results 21 - 40 of 377 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6632 5' -53.1 NC_001847.1 + 100558 0.66 0.970875
Target:  5'- cGGCcGCGGCGAuuauuGCCGCCAGg------ -3'
miRNA:   3'- -CCGcUGCUGCU-----CGGCGGUUaucuucu -5'
6632 5' -53.1 NC_001847.1 + 96859 0.66 0.970875
Target:  5'- gGGCGGCGGUGGGCgGCgGuccgcgcugGGGAGGg -3'
miRNA:   3'- -CCGCUGCUGCUCGgCGgUua-------UCUUCU- -5'
6632 5' -53.1 NC_001847.1 + 58055 0.66 0.970875
Target:  5'- cGCG-CG-CGGGCCGCCGAUuGGc-- -3'
miRNA:   3'- cCGCuGCuGCUCGGCGGUUAuCUucu -5'
6632 5' -53.1 NC_001847.1 + 30830 0.66 0.970875
Target:  5'- cGGCGGCG--GGGCCGUggcuuaCGAcGGAAGAc -3'
miRNA:   3'- -CCGCUGCugCUCGGCG------GUUaUCUUCU- -5'
6632 5' -53.1 NC_001847.1 + 29953 0.66 0.970875
Target:  5'- aGGCGcCGGCGAaaaGCCGCCGc------- -3'
miRNA:   3'- -CCGCuGCUGCU---CGGCGGUuaucuucu -5'
6632 5' -53.1 NC_001847.1 + 86239 0.66 0.970875
Target:  5'- cGCGugGACGAGgaGCUGcUGGgcGAc -3'
miRNA:   3'- cCGCugCUGCUCggCGGUuAUCuuCU- -5'
6632 5' -53.1 NC_001847.1 + 59377 0.66 0.970287
Target:  5'- cGGCGGCGGCcGGCaaaaaauacggaGCCGGcGGAGGc -3'
miRNA:   3'- -CCGCUGCUGcUCGg-----------CGGUUaUCUUCu -5'
6632 5' -53.1 NC_001847.1 + 55499 0.66 0.969085
Target:  5'- gGGCGACGugggcccugcugcugGCGGcGcCCGCCGcgGGgcGAc -3'
miRNA:   3'- -CCGCUGC---------------UGCU-C-GGCGGUuaUCuuCU- -5'
6632 5' -53.1 NC_001847.1 + 12529 0.66 0.969085
Target:  5'- aGGCGACGAC--GCCGCagaccugcgcGAGGAc -3'
miRNA:   3'- -CCGCUGCUGcuCGGCGguuau-----CUUCU- -5'
6632 5' -53.1 NC_001847.1 + 42360 0.66 0.967848
Target:  5'- cGGCGACGuacucuuCGAGUCGCCcAUGc---- -3'
miRNA:   3'- -CCGCUGCu------GCUCGGCGGuUAUcuucu -5'
6632 5' -53.1 NC_001847.1 + 134637 0.66 0.967848
Target:  5'- gGGCuGGgGGCGGGCCGgCAGcAGGcgcGGAg -3'
miRNA:   3'- -CCG-CUgCUGCUCGGCgGUUaUCU---UCU- -5'
6632 5' -53.1 NC_001847.1 + 18799 0.66 0.967848
Target:  5'- cGCGGCGGCGGcGCgCGCCAgcgcgcgcAUGGGc-- -3'
miRNA:   3'- cCGCUGCUGCU-CG-GCGGU--------UAUCUucu -5'
6632 5' -53.1 NC_001847.1 + 81191 0.66 0.967848
Target:  5'- cGCGGCGGCGccAGCCGgCGcgcgcGUAGAugcAGGc -3'
miRNA:   3'- cCGCUGCUGC--UCGGCgGU-----UAUCU---UCU- -5'
6632 5' -53.1 NC_001847.1 + 101636 0.66 0.967848
Target:  5'- cGCGGCGGCGcccGCCGCCGc------- -3'
miRNA:   3'- cCGCUGCUGCu--CGGCGGUuaucuucu -5'
6632 5' -53.1 NC_001847.1 + 3091 0.66 0.967848
Target:  5'- cGCGAUGACGccccccacgauAGCgGCCAgGUAGAGc- -3'
miRNA:   3'- cCGCUGCUGC-----------UCGgCGGU-UAUCUUcu -5'
6632 5' -53.1 NC_001847.1 + 52315 0.66 0.967848
Target:  5'- gGGCGGCGccaacCGGGacaacaCGCUggUGGAAGc -3'
miRNA:   3'- -CCGCUGCu----GCUCg-----GCGGuuAUCUUCu -5'
6632 5' -53.1 NC_001847.1 + 122134 0.66 0.967848
Target:  5'- cGCGACGGcCGGcgcgcagggcGCCGCgCGGgacgAGGAGAg -3'
miRNA:   3'- cCGCUGCU-GCU----------CGGCG-GUUa---UCUUCU- -5'
6632 5' -53.1 NC_001847.1 + 76398 0.66 0.967848
Target:  5'- cGCGGCcgccgccgcuGuCGGGCCGCC---GGAGGAg -3'
miRNA:   3'- cCGCUG----------CuGCUCGGCGGuuaUCUUCU- -5'
6632 5' -53.1 NC_001847.1 + 22820 0.66 0.967848
Target:  5'- cGGCGGCGGCcgcuccCCGCCGAgguaguugucGAAGAu -3'
miRNA:   3'- -CCGCUGCUGcuc---GGCGGUUau--------CUUCU- -5'
6632 5' -53.1 NC_001847.1 + 88844 0.66 0.964604
Target:  5'- cGGCGcuACGGCuGGCCGUaga-GGAAGAc -3'
miRNA:   3'- -CCGC--UGCUGcUCGGCGguuaUCUUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.