miRNA display CGI


Results 1 - 20 of 415 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6633 3' -62.1 NC_001847.1 + 52281 0.66 0.608393
Target:  5'- -----cGCGCGCcGGCuuugugugcgcgaccGCGGGCGCGg -3'
miRNA:   3'- guagaaCGCGCGuCCGc--------------CGCCCGCGU- -5'
6633 3' -62.1 NC_001847.1 + 106061 0.66 0.607395
Target:  5'- ----gUGCuCGCcGGCGGCagGGGCGCc -3'
miRNA:   3'- guagaACGcGCGuCCGCCG--CCCGCGu -5'
6633 3' -62.1 NC_001847.1 + 3248 0.66 0.607395
Target:  5'- ----gUGCuCGCcGGCGGCagGGGCGCc -3'
miRNA:   3'- guagaACGcGCGuCCGCCG--CCCGCGu -5'
6633 3' -62.1 NC_001847.1 + 91655 0.66 0.607395
Target:  5'- gAUCga-CG-GCGGcGCGGCGGGaCGCGa -3'
miRNA:   3'- gUAGaacGCgCGUC-CGCCGCCC-GCGU- -5'
6633 3' -62.1 NC_001847.1 + 11971 0.66 0.607395
Target:  5'- -cUCgagGCGUGCcguuGGCGGgGGcucGCGCAa -3'
miRNA:   3'- guAGaa-CGCGCGu---CCGCCgCC---CGCGU- -5'
6633 3' -62.1 NC_001847.1 + 55139 0.66 0.607395
Target:  5'- gCAUC---CGCGCGGGCGcG-GGGCGUc -3'
miRNA:   3'- -GUAGaacGCGCGUCCGC-CgCCCGCGu -5'
6633 3' -62.1 NC_001847.1 + 119105 0.66 0.607395
Target:  5'- -----cGC-CGCgGGGCGGCGGG-GCAg -3'
miRNA:   3'- guagaaCGcGCG-UCCGCCGCCCgCGU- -5'
6633 3' -62.1 NC_001847.1 + 46510 0.66 0.607395
Target:  5'- gCGUUgccagcgGCaGCGCucgggGGGCGGCGGcgGCGCGc -3'
miRNA:   3'- -GUAGaa-----CG-CGCG-----UCCGCCGCC--CGCGU- -5'
6633 3' -62.1 NC_001847.1 + 77713 0.66 0.607395
Target:  5'- -----cGCGCGCuGGUGcGCGcuuGGCGCGc -3'
miRNA:   3'- guagaaCGCGCGuCCGC-CGC---CCGCGU- -5'
6633 3' -62.1 NC_001847.1 + 73360 0.66 0.607395
Target:  5'- -----cGCGUGCcGGCGGgGGGUcgGCGg -3'
miRNA:   3'- guagaaCGCGCGuCCGCCgCCCG--CGU- -5'
6633 3' -62.1 NC_001847.1 + 10190 0.66 0.606396
Target:  5'- -cUUUUGCGCGCcgccgccgccgccGGGCccaGGGCGCGc -3'
miRNA:   3'- guAGAACGCGCG-------------UCCGccgCCCGCGU- -5'
6633 3' -62.1 NC_001847.1 + 113003 0.66 0.606396
Target:  5'- -cUUUUGCGCGCcgccgccgccgccGGGCccaGGGCGCGc -3'
miRNA:   3'- guAGAACGCGCG-------------UCCGccgCCCGCGU- -5'
6633 3' -62.1 NC_001847.1 + 17269 0.66 0.606396
Target:  5'- ---gUUGCggaaccaGUGCAGGCGcGUGGaGCGCGg -3'
miRNA:   3'- guagAACG-------CGCGUCCGC-CGCC-CGCGU- -5'
6633 3' -62.1 NC_001847.1 + 134229 0.66 0.597415
Target:  5'- -uUCccgGCGCcgGCGGGCGGCGgccGGCGg- -3'
miRNA:   3'- guAGaa-CGCG--CGUCCGCCGC---CCGCgu -5'
6633 3' -62.1 NC_001847.1 + 107434 0.66 0.597415
Target:  5'- -----aGCucgGCGCGGGCGGCccgccGGCGCu -3'
miRNA:   3'- guagaaCG---CGCGUCCGCCGc----CCGCGu -5'
6633 3' -62.1 NC_001847.1 + 67520 0.66 0.597415
Target:  5'- cCGUCUccgccgGCGCcgccuuuuuccGCAGGC-GCGGGCGg- -3'
miRNA:   3'- -GUAGAa-----CGCG-----------CGUCCGcCGCCCGCgu -5'
6633 3' -62.1 NC_001847.1 + 107113 0.66 0.597415
Target:  5'- gCGUCUggcGUGUGCAGGCGcucguaagcGCGGcacgccGCGCGc -3'
miRNA:   3'- -GUAGAa--CGCGCGUCCGC---------CGCC------CGCGU- -5'
6633 3' -62.1 NC_001847.1 + 131360 0.66 0.597415
Target:  5'- -----cGUGCGCuucGGCGGCgcGGGCGaCAc -3'
miRNA:   3'- guagaaCGCGCGu--CCGCCG--CCCGC-GU- -5'
6633 3' -62.1 NC_001847.1 + 94158 0.66 0.597415
Target:  5'- aCAUCUcGCG-GC-GGCuGCuGGGCGCGg -3'
miRNA:   3'- -GUAGAaCGCgCGuCCGcCG-CCCGCGU- -5'
6633 3' -62.1 NC_001847.1 + 60437 0.66 0.597415
Target:  5'- gCGUCcacGCGCGCGucGGCGcugcccccGuCGGGCGCGu -3'
miRNA:   3'- -GUAGaa-CGCGCGU--CCGC--------C-GCCCGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.