miRNA display CGI


Results 1 - 20 of 463 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6633 5' -55.4 NC_001847.1 + 78065 0.66 0.900867
Target:  5'- cGCGGcCACGACGGC-GCAggagucCGGGCGGc -3'
miRNA:   3'- uCGUCcGUGCUGUCGaCGU------GCUUGUC- -5'
6633 5' -55.4 NC_001847.1 + 121189 0.66 0.900867
Target:  5'- uGCGGGaGCGGCAcUUGCGCgGGGCGGc -3'
miRNA:   3'- uCGUCCgUGCUGUcGACGUG-CUUGUC- -5'
6633 5' -55.4 NC_001847.1 + 18115 0.66 0.900867
Target:  5'- cAGCAGcucCGCGGCGGUgggGCGCGcGCGa -3'
miRNA:   3'- -UCGUCc--GUGCUGUCGa--CGUGCuUGUc -5'
6633 5' -55.4 NC_001847.1 + 83182 0.66 0.900867
Target:  5'- gGGCuGGCG-GACGGCgggGgGCGcGCAGa -3'
miRNA:   3'- -UCGuCCGUgCUGUCGa--CgUGCuUGUC- -5'
6633 5' -55.4 NC_001847.1 + 126129 0.66 0.900867
Target:  5'- uAGCAGGggguCGCGGCcGC-GCACGAugGc -3'
miRNA:   3'- -UCGUCC----GUGCUGuCGaCGUGCUugUc -5'
6633 5' -55.4 NC_001847.1 + 29850 0.66 0.900867
Target:  5'- aGGCuGuGCugGGCgAGCUGCAC--ACGGu -3'
miRNA:   3'- -UCGuC-CGugCUG-UCGACGUGcuUGUC- -5'
6633 5' -55.4 NC_001847.1 + 98328 0.66 0.900867
Target:  5'- cAGUcGGCGCGcCGGUggcGCACGaAGCGGc -3'
miRNA:   3'- -UCGuCCGUGCuGUCGa--CGUGC-UUGUC- -5'
6633 5' -55.4 NC_001847.1 + 69374 0.66 0.900867
Target:  5'- aAGCGuacacGGCGCG-CAGCUuGCGCccGCGGg -3'
miRNA:   3'- -UCGU-----CCGUGCuGUCGA-CGUGcuUGUC- -5'
6633 5' -55.4 NC_001847.1 + 59214 0.66 0.900867
Target:  5'- uGGCGGcGCACGGCGGCgccacCGCGuGCu- -3'
miRNA:   3'- -UCGUC-CGUGCUGUCGac---GUGCuUGuc -5'
6633 5' -55.4 NC_001847.1 + 14021 0.66 0.900867
Target:  5'- cAGCAGGCgGCGGC-GCaGCGC--GCAGu -3'
miRNA:   3'- -UCGUCCG-UGCUGuCGaCGUGcuUGUC- -5'
6633 5' -55.4 NC_001847.1 + 124736 0.66 0.900867
Target:  5'- cGCGGGCgagGCGgagagaggaccGCGGCU-CGCGGGCGGc -3'
miRNA:   3'- uCGUCCG---UGC-----------UGUCGAcGUGCUUGUC- -5'
6633 5' -55.4 NC_001847.1 + 62711 0.66 0.900867
Target:  5'- cGGCAGGCGCGuCA-CUcugaGCACGcGCAu -3'
miRNA:   3'- -UCGUCCGUGCuGUcGA----CGUGCuUGUc -5'
6633 5' -55.4 NC_001847.1 + 83457 0.66 0.900867
Target:  5'- cGaCGGcGCGCGACGGCgcGCGCGuACGc -3'
miRNA:   3'- uC-GUC-CGUGCUGUCGa-CGUGCuUGUc -5'
6633 5' -55.4 NC_001847.1 + 103136 0.66 0.900867
Target:  5'- cGCGGGC-CGcCGGC-GCGCGAAgGu -3'
miRNA:   3'- uCGUCCGuGCuGUCGaCGUGCUUgUc -5'
6633 5' -55.4 NC_001847.1 + 6096 0.66 0.900867
Target:  5'- cGgAGGCGCGAgacgcccgcgaGGCgcgGCGCGAGCGc -3'
miRNA:   3'- uCgUCCGUGCUg----------UCGa--CGUGCUUGUc -5'
6633 5' -55.4 NC_001847.1 + 73177 0.66 0.900867
Target:  5'- aGGCGGaCGCGGCGGCggagucggcccGCGCGGGCc- -3'
miRNA:   3'- -UCGUCcGUGCUGUCGa----------CGUGCUUGuc -5'
6633 5' -55.4 NC_001847.1 + 29707 0.66 0.900867
Target:  5'- cGCuuGGGCGCGagacuGCGGC-GCGgGAGCGGu -3'
miRNA:   3'- uCG--UCCGUGC-----UGUCGaCGUgCUUGUC- -5'
6633 5' -55.4 NC_001847.1 + 16706 0.66 0.900867
Target:  5'- cGGCAGGCGCaGACGa--GCACGAucacCAGc -3'
miRNA:   3'- -UCGUCCGUG-CUGUcgaCGUGCUu---GUC- -5'
6633 5' -55.4 NC_001847.1 + 61448 0.66 0.900867
Target:  5'- cGcCGGGCGCGGCgaGGCgGuCGCGcAGCAGc -3'
miRNA:   3'- uC-GUCCGUGCUG--UCGaC-GUGC-UUGUC- -5'
6633 5' -55.4 NC_001847.1 + 93627 0.66 0.900213
Target:  5'- cGGCcGGCGCGGCcGCggacgucUGCACGcuCGGu -3'
miRNA:   3'- -UCGuCCGUGCUGuCG-------ACGUGCuuGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.