miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6634 3' -56.9 NC_001847.1 + 125240 0.66 0.872007
Target:  5'- gGGGCGgggCCcgagacCACGcGGUCGggCGAGCGg -3'
miRNA:   3'- -CUCGCa--GGu-----GUGCuCCAGCa-GCUCGU- -5'
6634 3' -56.9 NC_001847.1 + 22427 0.66 0.872007
Target:  5'- gGGGCGgggCCcgagacCACGcGGUCGggCGAGCGg -3'
miRNA:   3'- -CUCGCa--GGu-----GUGCuCCAGCa-GCUCGU- -5'
6634 3' -56.9 NC_001847.1 + 80853 0.66 0.872007
Target:  5'- cGGGCGgcggCgCGCGuCGAGGcCGUCcGGCAg -3'
miRNA:   3'- -CUCGCa---G-GUGU-GCUCCaGCAGcUCGU- -5'
6634 3' -56.9 NC_001847.1 + 35525 0.66 0.872007
Target:  5'- cGAGCGcaUCCucgGCGAGGUCGUggcugcCGAGgCGg -3'
miRNA:   3'- -CUCGC--AGGug-UGCUCCAGCA------GCUC-GU- -5'
6634 3' -56.9 NC_001847.1 + 6839 0.66 0.872007
Target:  5'- --aCGUCCucgGCGAGGUgcUCGAGCAg -3'
miRNA:   3'- cucGCAGGug-UGCUCCAgcAGCUCGU- -5'
6634 3' -56.9 NC_001847.1 + 120352 0.66 0.864589
Target:  5'- cGGGCGgcgCUACaACGGGacCGUCGAGCu -3'
miRNA:   3'- -CUCGCa--GGUG-UGCUCcaGCAGCUCGu -5'
6634 3' -56.9 NC_001847.1 + 1970 0.66 0.863836
Target:  5'- cGGGCGgcgCCGCcaGCGccuccccggcagcGGGUCGUaGAGCAc -3'
miRNA:   3'- -CUCGCa--GGUG--UGC-------------UCCAGCAgCUCGU- -5'
6634 3' -56.9 NC_001847.1 + 13279 0.66 0.862323
Target:  5'- -cGCGUCCAgggcCACGucggugaagcacucGcGGUCGUCGAGgCAg -3'
miRNA:   3'- cuCGCAGGU----GUGC--------------U-CCAGCAGCUC-GU- -5'
6634 3' -56.9 NC_001847.1 + 126091 0.66 0.856963
Target:  5'- gGAGCG-CUGCACGGGGgggCG--GAGCAc -3'
miRNA:   3'- -CUCGCaGGUGUGCUCCa--GCagCUCGU- -5'
6634 3' -56.9 NC_001847.1 + 51988 0.66 0.856963
Target:  5'- cGGGCGUU---GgGAGGUCGcCGGGCGg -3'
miRNA:   3'- -CUCGCAGgugUgCUCCAGCaGCUCGU- -5'
6634 3' -56.9 NC_001847.1 + 23278 0.66 0.856963
Target:  5'- gGAGCG-CUGCACGGGGgggCG--GAGCAc -3'
miRNA:   3'- -CUCGCaGGUGUGCUCCa--GCagCUCGU- -5'
6634 3' -56.9 NC_001847.1 + 83136 0.66 0.856963
Target:  5'- cGGCGgCCGC-CGcGG-CGUCGGGCGc -3'
miRNA:   3'- cUCGCaGGUGuGCuCCaGCAGCUCGU- -5'
6634 3' -56.9 NC_001847.1 + 35565 0.66 0.856963
Target:  5'- -cGCGaCCGCgACGAGGgCGcCGGGCu -3'
miRNA:   3'- cuCGCaGGUG-UGCUCCaGCaGCUCGu -5'
6634 3' -56.9 NC_001847.1 + 60864 0.66 0.856963
Target:  5'- aGGGCGUCCAgCGCGGGG-CGgcCGcGCc -3'
miRNA:   3'- -CUCGCAGGU-GUGCUCCaGCa-GCuCGu -5'
6634 3' -56.9 NC_001847.1 + 4973 0.66 0.849133
Target:  5'- cGGGCG-CC-CGCGGGGUCGUgaCGuccucGCAg -3'
miRNA:   3'- -CUCGCaGGuGUGCUCCAGCA--GCu----CGU- -5'
6634 3' -56.9 NC_001847.1 + 122343 0.66 0.849133
Target:  5'- -cGCG-CCACGCGcuGaUCGUUGGGCGg -3'
miRNA:   3'- cuCGCaGGUGUGCucC-AGCAGCUCGU- -5'
6634 3' -56.9 NC_001847.1 + 71434 0.66 0.849133
Target:  5'- gGAGgGUgCACacgACGAGGUUGgcccCGGGCGc -3'
miRNA:   3'- -CUCgCAgGUG---UGCUCCAGCa---GCUCGU- -5'
6634 3' -56.9 NC_001847.1 + 134908 0.66 0.841107
Target:  5'- cGGGCGUCgggGCGCGAGGccCGggcUCGGGCc -3'
miRNA:   3'- -CUCGCAGg--UGUGCUCCa-GC---AGCUCGu -5'
6634 3' -56.9 NC_001847.1 + 97686 0.66 0.841107
Target:  5'- cAGCGagUCCAcCGCGAGuGUCGUCcacAGCGc -3'
miRNA:   3'- cUCGC--AGGU-GUGCUC-CAGCAGc--UCGU- -5'
6634 3' -56.9 NC_001847.1 + 32095 0.66 0.841107
Target:  5'- cGGGCGUCgggGCGCGAGGccCGggcUCGGGCc -3'
miRNA:   3'- -CUCGCAGg--UGUGCUCCa-GC---AGCUCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.