miRNA display CGI


Results 1 - 20 of 427 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6634 5' -63.7 NC_001847.1 + 114147 0.66 0.573948
Target:  5'- aGCCGCgCGcggugccgauugggaGGCCUagUGCGCGCGcCCg -3'
miRNA:   3'- -CGGUGgGC---------------UCGGGa-GCGCGCGCaGGa -5'
6634 5' -63.7 NC_001847.1 + 27944 0.66 0.570095
Target:  5'- --gGCCUGGGCCgCggCGCGCGCGcUCg- -3'
miRNA:   3'- cggUGGGCUCGG-Ga-GCGCGCGC-AGga -5'
6634 5' -63.7 NC_001847.1 + 12921 0.66 0.570095
Target:  5'- uGCCGCCgCGGGgg--CGCGCGUGUCg- -3'
miRNA:   3'- -CGGUGG-GCUCgggaGCGCGCGCAGga -5'
6634 5' -63.7 NC_001847.1 + 111637 0.66 0.570095
Target:  5'- cCCACCCGAGCUCgaGCGaacgGCuUCCUc -3'
miRNA:   3'- cGGUGGGCUCGGGagCGCg---CGcAGGA- -5'
6634 5' -63.7 NC_001847.1 + 4659 0.66 0.570095
Target:  5'- aCCGCCCGAcGUUgCUUGCG-GCGUCUg -3'
miRNA:   3'- cGGUGGGCU-CGG-GAGCGCgCGCAGGa -5'
6634 5' -63.7 NC_001847.1 + 69423 0.66 0.570095
Target:  5'- cGCCGCCCcggcGGGCUCUgGgaugaaCGCGUCCg -3'
miRNA:   3'- -CGGUGGG----CUCGGGAgCgc----GCGCAGGa -5'
6634 5' -63.7 NC_001847.1 + 99944 0.66 0.570095
Target:  5'- gGgCGCCC-AGCCg-CGCGCGC-UCCUc -3'
miRNA:   3'- -CgGUGGGcUCGGgaGCGCGCGcAGGA- -5'
6634 5' -63.7 NC_001847.1 + 126475 0.66 0.570095
Target:  5'- gGCUACUCGGGgaUCUUGCGCGCcaucGUCUg -3'
miRNA:   3'- -CGGUGGGCUCg-GGAGCGCGCG----CAGGa -5'
6634 5' -63.7 NC_001847.1 + 8824 0.66 0.570095
Target:  5'- cCCACCCGAGCUCgaGCGaacgGCuUCCUc -3'
miRNA:   3'- cGGUGGGCUCGGGagCGCg---CGcAGGA- -5'
6634 5' -63.7 NC_001847.1 + 54252 0.66 0.570095
Target:  5'- gGCCACgCGuGUCUcuaugUCGCGgGCGUgCUg -3'
miRNA:   3'- -CGGUGgGCuCGGG-----AGCGCgCGCAgGA- -5'
6634 5' -63.7 NC_001847.1 + 92656 0.66 0.570095
Target:  5'- uUCGCCCGcAGCgCUUCG-GCGCG-CCg -3'
miRNA:   3'- cGGUGGGC-UCG-GGAGCgCGCGCaGGa -5'
6634 5' -63.7 NC_001847.1 + 3028 0.66 0.569133
Target:  5'- gGCCGCgCCGAGCagCUCGgcggcccggagcaCGCGC-UCCg -3'
miRNA:   3'- -CGGUG-GGCUCGg-GAGC-------------GCGCGcAGGa -5'
6634 5' -63.7 NC_001847.1 + 105841 0.66 0.569133
Target:  5'- gGCCGCgCCGAGCagCUCGgcggcccggagcaCGCGC-UCCg -3'
miRNA:   3'- -CGGUG-GGCUCGg-GAGC-------------GCGCGcAGGa -5'
6634 5' -63.7 NC_001847.1 + 118242 0.66 0.569133
Target:  5'- aGCgGCCCGGGCugguaaaCCUgCGCGgCGUGcgCCUg -3'
miRNA:   3'- -CGgUGGGCUCG-------GGA-GCGC-GCGCa-GGA- -5'
6634 5' -63.7 NC_001847.1 + 130314 0.66 0.56721
Target:  5'- aUCGCCgGcGGCCCcacgcucaagggcaUCGCGCGCcucGUCCa -3'
miRNA:   3'- cGGUGGgC-UCGGG--------------AGCGCGCG---CAGGa -5'
6634 5' -63.7 NC_001847.1 + 109806 0.66 0.564328
Target:  5'- cGCCACgUGgacgaugcgggagccGGCCUUUGgGCGCGcCCUc -3'
miRNA:   3'- -CGGUGgGC---------------UCGGGAGCgCGCGCaGGA- -5'
6634 5' -63.7 NC_001847.1 + 70143 0.66 0.560492
Target:  5'- cGCCAUCC-AGCagCUCGCGCGCa---- -3'
miRNA:   3'- -CGGUGGGcUCGg-GAGCGCGCGcagga -5'
6634 5' -63.7 NC_001847.1 + 2352 0.66 0.560492
Target:  5'- cGCCGCgCCG-GCCCg-GC-CGCGUCg- -3'
miRNA:   3'- -CGGUG-GGCuCGGGagCGcGCGCAGga -5'
6634 5' -63.7 NC_001847.1 + 19013 0.66 0.560492
Target:  5'- cGCC-CUCG-GCCUcuUCGCGCGUGaCCc -3'
miRNA:   3'- -CGGuGGGCuCGGG--AGCGCGCGCaGGa -5'
6634 5' -63.7 NC_001847.1 + 1087 0.66 0.560492
Target:  5'- uCCACgCCGGGCgCCgcggcCGCGgGCGgcgCCg -3'
miRNA:   3'- cGGUG-GGCUCG-GGa----GCGCgCGCa--GGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.