miRNA display CGI


Results 1 - 20 of 427 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6634 5' -63.7 NC_001847.1 + 91496 1.09 0.00059
Target:  5'- gGCCACCCGAGCCCUCGCGCGCGUCCUg -3'
miRNA:   3'- -CGGUGGGCUCGGGAGCGCGCGCAGGA- -5'
6634 5' -63.7 NC_001847.1 + 116945 0.85 0.02943
Target:  5'- cGCCAgCCCGAGaCCUCGcCGCGCGUCCg -3'
miRNA:   3'- -CGGU-GGGCUCgGGAGC-GCGCGCAGGa -5'
6634 5' -63.7 NC_001847.1 + 62043 0.79 0.084365
Target:  5'- cGCCACCCGGGCCUcaaugggccggaUGCGCGCGUCg- -3'
miRNA:   3'- -CGGUGGGCUCGGGa-----------GCGCGCGCAGga -5'
6634 5' -63.7 NC_001847.1 + 53257 0.78 0.091254
Target:  5'- cGCCGCCuCGGcggggcgcugcgcGCCCagGCGCGCGUCCg -3'
miRNA:   3'- -CGGUGG-GCU-------------CGGGagCGCGCGCAGGa -5'
6634 5' -63.7 NC_001847.1 + 45827 0.78 0.101188
Target:  5'- uGCCGCCCGGGCCaCUCGCuGgGCGgcacggCCg -3'
miRNA:   3'- -CGGUGGGCUCGG-GAGCG-CgCGCa-----GGa -5'
6634 5' -63.7 NC_001847.1 + 80770 0.78 0.103501
Target:  5'- gGCCGCCCGccgcagcAGCUCgCGCaGCGCGUCCUc -3'
miRNA:   3'- -CGGUGGGC-------UCGGGaGCG-CGCGCAGGA- -5'
6634 5' -63.7 NC_001847.1 + 53967 0.78 0.106395
Target:  5'- cGCCGCCgCGAGCCCUCcgaGCGgCGCGgcgggCCa -3'
miRNA:   3'- -CGGUGG-GCUCGGGAG---CGC-GCGCa----GGa -5'
6634 5' -63.7 NC_001847.1 + 63193 0.77 0.111854
Target:  5'- cGCCAUggCCGAGCCCgCGCGCGCucUCCg -3'
miRNA:   3'- -CGGUG--GGCUCGGGaGCGCGCGc-AGGa -5'
6634 5' -63.7 NC_001847.1 + 56810 0.77 0.114681
Target:  5'- cGCCGCggcgcccaagCCGGGCCCgcggCGCGCGCG-CCg -3'
miRNA:   3'- -CGGUG----------GGCUCGGGa---GCGCGCGCaGGa -5'
6634 5' -63.7 NC_001847.1 + 131216 0.77 0.120536
Target:  5'- cGCCGCCCGcuGCCagcgcugUGCGUGCGUCCg -3'
miRNA:   3'- -CGGUGGGCu-CGGga-----GCGCGCGCAGGa -5'
6634 5' -63.7 NC_001847.1 + 52558 0.77 0.120536
Target:  5'- cGCCGCCgCGAGCgCUUCGCGCacGCGcUCCg -3'
miRNA:   3'- -CGGUGG-GCUCG-GGAGCGCG--CGC-AGGa -5'
6634 5' -63.7 NC_001847.1 + 50018 0.76 0.136408
Target:  5'- cGCCugCUGGGCCC-CGgGCGCG-CCg -3'
miRNA:   3'- -CGGugGGCUCGGGaGCgCGCGCaGGa -5'
6634 5' -63.7 NC_001847.1 + 85070 0.76 0.143279
Target:  5'- gGCCgcGCCCGGGUCCgcgcCGCGCGCGgacCCg -3'
miRNA:   3'- -CGG--UGGGCUCGGGa---GCGCGCGCa--GGa -5'
6634 5' -63.7 NC_001847.1 + 38208 0.75 0.150465
Target:  5'- uGCCGCCCGcggaGGCCCgggcCGCGCGCcUCUa -3'
miRNA:   3'- -CGGUGGGC----UCGGGa---GCGCGCGcAGGa -5'
6634 5' -63.7 NC_001847.1 + 18720 0.75 0.150465
Target:  5'- cGCC-CUCGAGCCCaaGCGCGCGgCCc -3'
miRNA:   3'- -CGGuGGGCUCGGGagCGCGCGCaGGa -5'
6634 5' -63.7 NC_001847.1 + 91337 0.75 0.151941
Target:  5'- gGCCGCCgucGCCCUcgaccggcgcgccggCGCGCGCGUCCa -3'
miRNA:   3'- -CGGUGGgcuCGGGA---------------GCGCGCGCAGGa -5'
6634 5' -63.7 NC_001847.1 + 937 0.75 0.15418
Target:  5'- cGCCGCCCucGGCCCgCGCGCGcCGcUCCa -3'
miRNA:   3'- -CGGUGGGc-UCGGGaGCGCGC-GC-AGGa -5'
6634 5' -63.7 NC_001847.1 + 283 0.75 0.157978
Target:  5'- gGCCG-CCGAGCCCgcgCGgGCGcCGUCCc -3'
miRNA:   3'- -CGGUgGGCUCGGGa--GCgCGC-GCAGGa -5'
6634 5' -63.7 NC_001847.1 + 133610 0.75 0.157978
Target:  5'- uCgGCCCGGgcGCCUUCGCGCGCG-CCg -3'
miRNA:   3'- cGgUGGGCU--CGGGAGCGCGCGCaGGa -5'
6634 5' -63.7 NC_001847.1 + 103096 0.75 0.157978
Target:  5'- gGCCG-CCGAGCCCgcgCGgGCGcCGUCCc -3'
miRNA:   3'- -CGGUgGGCUCGGGa--GCgCGC-GCAGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.