miRNA display CGI


Results 1 - 20 of 54 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6635 3' -58.2 NC_001847.1 + 114454 0.66 0.815563
Target:  5'- cGCGAGCgccucgcuuaucggCCGCcagcuGGcggACGUCUCCGc -3'
miRNA:   3'- uCGCUCGa-------------GGCGcu---CCa--UGCAGAGGU- -5'
6635 3' -58.2 NC_001847.1 + 67111 0.66 0.812107
Target:  5'- uGuCGAGCUuuGUGcAGGUGCGgCUCa- -3'
miRNA:   3'- uC-GCUCGAggCGC-UCCAUGCaGAGgu -5'
6635 3' -58.2 NC_001847.1 + 120625 0.66 0.812107
Target:  5'- cAGCGAGCgCCGcCGAG--ACGUCUUUc -3'
miRNA:   3'- -UCGCUCGaGGC-GCUCcaUGCAGAGGu -5'
6635 3' -58.2 NC_001847.1 + 7259 0.66 0.812107
Target:  5'- uGCGGGCgCgGCGGGGgcacgcgagACG-CUCCGc -3'
miRNA:   3'- uCGCUCGaGgCGCUCCa--------UGCaGAGGU- -5'
6635 3' -58.2 NC_001847.1 + 103035 0.66 0.812107
Target:  5'- cGGCGGGCgggCCGC-AGccGCGUUUCCc -3'
miRNA:   3'- -UCGCUCGa--GGCGcUCcaUGCAGAGGu -5'
6635 3' -58.2 NC_001847.1 + 84466 0.66 0.812107
Target:  5'- cGCGAGCacagcCCGCaGGGcACGUCgcccUCCAg -3'
miRNA:   3'- uCGCUCGa----GGCGcUCCaUGCAG----AGGU- -5'
6635 3' -58.2 NC_001847.1 + 122877 0.66 0.812107
Target:  5'- gGGCGcGCUCgG-GuGGUGCGUCugugUCCAu -3'
miRNA:   3'- -UCGCuCGAGgCgCuCCAUGCAG----AGGU- -5'
6635 3' -58.2 NC_001847.1 + 121015 0.66 0.809497
Target:  5'- cGCGGGCcCCGCccaucgcccgugacGAGGUGCGgguggUCCGc -3'
miRNA:   3'- uCGCUCGaGGCG--------------CUCCAUGCag---AGGU- -5'
6635 3' -58.2 NC_001847.1 + 63212 0.66 0.803354
Target:  5'- cGCGcuCUCCGCGucGUGCGUaUCUAc -3'
miRNA:   3'- uCGCucGAGGCGCucCAUGCAgAGGU- -5'
6635 3' -58.2 NC_001847.1 + 116171 0.66 0.784485
Target:  5'- cGCGGGCgCCGCGGccgcgcuGGU-CGUCgccgCCAc -3'
miRNA:   3'- uCGCUCGaGGCGCU-------CCAuGCAGa---GGU- -5'
6635 3' -58.2 NC_001847.1 + 51167 0.66 0.784485
Target:  5'- cGGCGc-CUUCGCGcGGUacgguacACGUCUCCGc -3'
miRNA:   3'- -UCGCucGAGGCGCuCCA-------UGCAGAGGU- -5'
6635 3' -58.2 NC_001847.1 + 61895 0.66 0.776212
Target:  5'- cGGCGAGCggaaguaCGCGAGGUccgccgagacagGCGUCg--- -3'
miRNA:   3'- -UCGCUCGag-----GCGCUCCA------------UGCAGaggu -5'
6635 3' -58.2 NC_001847.1 + 2081 0.66 0.776212
Target:  5'- cGGCGAGCgccCCGCGGGGcccgcGCGgcggCgggCCGc -3'
miRNA:   3'- -UCGCUCGa--GGCGCUCCa----UGCa---Ga--GGU- -5'
6635 3' -58.2 NC_001847.1 + 112762 0.66 0.776212
Target:  5'- cGCGAccccgGC-CCGCGGGGgccuCGUC-CCAg -3'
miRNA:   3'- uCGCU-----CGaGGCGCUCCau--GCAGaGGU- -5'
6635 3' -58.2 NC_001847.1 + 49225 0.66 0.776212
Target:  5'- cGCGGGCUUCGU---GUACGUCUgCGa -3'
miRNA:   3'- uCGCUCGAGGCGcucCAUGCAGAgGU- -5'
6635 3' -58.2 NC_001847.1 + 85495 0.66 0.776212
Target:  5'- cGCgGAGaaggCCGCuGuGGUcgGCGUCUCCAa -3'
miRNA:   3'- uCG-CUCga--GGCG-CuCCA--UGCAGAGGU- -5'
6635 3' -58.2 NC_001847.1 + 104894 0.66 0.776212
Target:  5'- cGGCGAGCgccCCGCGGGGcccgcGCGgcggCgggCCGc -3'
miRNA:   3'- -UCGCUCGa--GGCGCUCCa----UGCa---Ga--GGU- -5'
6635 3' -58.2 NC_001847.1 + 84225 0.66 0.771571
Target:  5'- cGCGAGCacguuuuccacggCCGCGcGGUACGUggccugcaugaugCUCCu -3'
miRNA:   3'- uCGCUCGa------------GGCGCuCCAUGCA-------------GAGGu -5'
6635 3' -58.2 NC_001847.1 + 32824 0.67 0.766899
Target:  5'- cGCGAGCg-CGCGAGGcccGCGUggCCGc -3'
miRNA:   3'- uCGCUCGagGCGCUCCa--UGCAgaGGU- -5'
6635 3' -58.2 NC_001847.1 + 91740 0.67 0.766899
Target:  5'- cGCGAGgUCCGCGuacgcccaucGGUccGCGggcgCUCCGu -3'
miRNA:   3'- uCGCUCgAGGCGCu---------CCA--UGCa---GAGGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.