miRNA display CGI


Results 1 - 20 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6635 5' -53.5 NC_001847.1 + 4475 0.66 0.942188
Target:  5'- ---cGGCGCC-CCCCGCGUcccuggcgccGGCgUCCUc -3'
miRNA:   3'- aaauUUGUGGcGGGGCGUA----------UCG-AGGA- -5'
6635 5' -53.5 NC_001847.1 + 32293 0.66 0.942188
Target:  5'- ---uGGCGCgGCCCCGCGacGCcgCCg -3'
miRNA:   3'- aaauUUGUGgCGGGGCGUauCGa-GGa -5'
6635 5' -53.5 NC_001847.1 + 83537 0.66 0.942188
Target:  5'- ----uGCGCCGCCCCGgGguggAGCacugCCc -3'
miRNA:   3'- aaauuUGUGGCGGGGCgUa---UCGa---GGa -5'
6635 5' -53.5 NC_001847.1 + 117326 0.66 0.942188
Target:  5'- ----uGCGCCGCaCUgGCAUGGCgCCc -3'
miRNA:   3'- aaauuUGUGGCG-GGgCGUAUCGaGGa -5'
6635 5' -53.5 NC_001847.1 + 25520 0.66 0.942188
Target:  5'- gUUAu-CGCCGCgCCUGCuu-GCUCCc -3'
miRNA:   3'- aAAUuuGUGGCG-GGGCGuauCGAGGa -5'
6635 5' -53.5 NC_001847.1 + 59279 0.66 0.942188
Target:  5'- -aUGGACGCCGCCgcgcgcaacaCCGCcgAGaccuUCCUg -3'
miRNA:   3'- aaAUUUGUGGCGG----------GGCGuaUCg---AGGA- -5'
6635 5' -53.5 NC_001847.1 + 101449 0.66 0.942188
Target:  5'- ----cGCGCCGCCgCGCcgcgAGCgCCUg -3'
miRNA:   3'- aaauuUGUGGCGGgGCGua--UCGaGGA- -5'
6635 5' -53.5 NC_001847.1 + 77452 0.66 0.942188
Target:  5'- --aGAGCGCgGCaCCCGCGgcGC-CCa -3'
miRNA:   3'- aaaUUUGUGgCG-GGGCGUauCGaGGa -5'
6635 5' -53.5 NC_001847.1 + 30822 0.66 0.942188
Target:  5'- ---cGAgGCCGCCUaCGCGcGGCUCUa -3'
miRNA:   3'- aaauUUgUGGCGGG-GCGUaUCGAGGa -5'
6635 5' -53.5 NC_001847.1 + 105648 0.66 0.942188
Target:  5'- --gAAGCGCCG-CCCGCGgccggagAGCgugCCg -3'
miRNA:   3'- aaaUUUGUGGCgGGGCGUa------UCGa--GGa -5'
6635 5' -53.5 NC_001847.1 + 87667 0.66 0.942188
Target:  5'- ------gGCUGCgCCGCAUGGC-CCg -3'
miRNA:   3'- aaauuugUGGCGgGGCGUAUCGaGGa -5'
6635 5' -53.5 NC_001847.1 + 128333 0.66 0.942188
Target:  5'- gUUAu-CGCCGCgCCUGCuu-GCUCCc -3'
miRNA:   3'- aAAUuuGUGGCG-GGGCGuauCGAGGa -5'
6635 5' -53.5 NC_001847.1 + 39575 0.66 0.942188
Target:  5'- --cGAAgGCCGCCCCGaacagGGUUCg- -3'
miRNA:   3'- aaaUUUgUGGCGGGGCgua--UCGAGga -5'
6635 5' -53.5 NC_001847.1 + 107288 0.66 0.942188
Target:  5'- ---cGGCGCC-CCCCGCGUcccuggcgccGGCgUCCUc -3'
miRNA:   3'- aaauUUGUGGcGGGGCGUA----------UCG-AGGA- -5'
6635 5' -53.5 NC_001847.1 + 4316 0.66 0.942188
Target:  5'- ----cGCGCCGCCUgCGgGUAguGCUCCg -3'
miRNA:   3'- aaauuUGUGGCGGG-GCgUAU--CGAGGa -5'
6635 5' -53.5 NC_001847.1 + 21210 0.66 0.942188
Target:  5'- --gAGACGCCGCCgcgaCCGCGcgcuGCUuCCUc -3'
miRNA:   3'- aaaUUUGUGGCGG----GGCGUau--CGA-GGA- -5'
6635 5' -53.5 NC_001847.1 + 133635 0.66 0.942188
Target:  5'- ---cGAgGCCGCCUaCGCGcGGCUCUa -3'
miRNA:   3'- aaauUUgUGGCGGG-GCGUaUCGAGGa -5'
6635 5' -53.5 NC_001847.1 + 29584 0.66 0.937264
Target:  5'- ---cGGCGCCGCCgCGCcgGGCcgggggCCg -3'
miRNA:   3'- aaauUUGUGGCGGgGCGuaUCGa-----GGa -5'
6635 5' -53.5 NC_001847.1 + 132397 0.66 0.937264
Target:  5'- ---cGGCGCCGCCgCGCcgGGCcgggggCCg -3'
miRNA:   3'- aaauUUGUGGCGGgGCGuaUCGa-----GGa -5'
6635 5' -53.5 NC_001847.1 + 369 0.66 0.937264
Target:  5'- --gGGGC-CCGCCCCGCGcgccGCgcgCCg -3'
miRNA:   3'- aaaUUUGuGGCGGGGCGUau--CGa--GGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.