miRNA display CGI


Results 1 - 20 of 808 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6636 3' -62.2 NC_001847.1 + 51176 0.66 0.623837
Target:  5'- cGCGCGguacgguacacgucuCCGCCCCcgGCCccgcGCGCaCUUCGa -3'
miRNA:   3'- cCGCGC---------------GGCGGGG--UGGu---CGUG-GAAGU- -5'
6636 3' -62.2 NC_001847.1 + 76537 0.66 0.622845
Target:  5'- gGGCGCGCUggccagcguguuacuGCCCacgcaGCCGGCggcccggcccccgAUCUUCGc -3'
miRNA:   3'- -CCGCGCGG---------------CGGGg----UGGUCG-------------UGGAAGU- -5'
6636 3' -62.2 NC_001847.1 + 30461 0.66 0.619867
Target:  5'- aGGUGgGCCGCuUUCugCAGCGCUg--- -3'
miRNA:   3'- -CCGCgCGGCG-GGGugGUCGUGGaagu -5'
6636 3' -62.2 NC_001847.1 + 99846 0.66 0.619867
Target:  5'- cGCGCGCCGCUCgGCgGGgCugCg--- -3'
miRNA:   3'- cCGCGCGGCGGGgUGgUC-GugGaagu -5'
6636 3' -62.2 NC_001847.1 + 60746 0.66 0.619867
Target:  5'- gGGCGCGgCGCgguggcgguuuUCCAgcuCCAGCGCCa--- -3'
miRNA:   3'- -CCGCGCgGCG-----------GGGU---GGUCGUGGaagu -5'
6636 3' -62.2 NC_001847.1 + 34790 0.66 0.619867
Target:  5'- cGGCGCGCgGCUacgacccgcggCCGCUGGCGCgg-CAg -3'
miRNA:   3'- -CCGCGCGgCGG-----------GGUGGUCGUGgaaGU- -5'
6636 3' -62.2 NC_001847.1 + 84784 0.66 0.619867
Target:  5'- gGGCGaCGCCGgCCagCGCCAGCuuuacCCUa-- -3'
miRNA:   3'- -CCGC-GCGGCgGG--GUGGUCGu----GGAagu -5'
6636 3' -62.2 NC_001847.1 + 74769 0.66 0.619867
Target:  5'- cGGCGCG-CGCCCC-CUGgcgaagguguGCACgUUCGa -3'
miRNA:   3'- -CCGCGCgGCGGGGuGGU----------CGUGgAAGU- -5'
6636 3' -62.2 NC_001847.1 + 131723 0.66 0.619867
Target:  5'- gGGCuGCGCCugGCCCCcCgGGCugCUc-- -3'
miRNA:   3'- -CCG-CGCGG--CGGGGuGgUCGugGAagu -5'
6636 3' -62.2 NC_001847.1 + 18417 0.66 0.619867
Target:  5'- cGGCGUGCaggGCCuuggCCACguGCGCCg--- -3'
miRNA:   3'- -CCGCGCGg--CGG----GGUGguCGUGGaagu -5'
6636 3' -62.2 NC_001847.1 + 14101 0.66 0.619867
Target:  5'- aGGCGCuGgCGgaCCACCcGCACCUcgUCAc -3'
miRNA:   3'- -CCGCG-CgGCggGGUGGuCGUGGA--AGU- -5'
6636 3' -62.2 NC_001847.1 + 31023 0.66 0.619867
Target:  5'- cGGCGCGCgCGCgCCGgCAaCGCCg--- -3'
miRNA:   3'- -CCGCGCG-GCGgGGUgGUcGUGGaagu -5'
6636 3' -62.2 NC_001847.1 + 105155 0.66 0.619867
Target:  5'- cGGCgGCucCCGCCgCGCCGGCccgGCCgcgUCGg -3'
miRNA:   3'- -CCG-CGc-GGCGGgGUGGUCG---UGGa--AGU- -5'
6636 3' -62.2 NC_001847.1 + 118188 0.66 0.619867
Target:  5'- cGGUGCGCgacggcauCGCCCCGUCGcGCACUgagCAg -3'
miRNA:   3'- -CCGCGCG--------GCGGGGUGGU-CGUGGaa-GU- -5'
6636 3' -62.2 NC_001847.1 + 39381 0.66 0.619867
Target:  5'- cGCGaCGCCGUCggggaGCCGGCGCCg--- -3'
miRNA:   3'- cCGC-GCGGCGGgg---UGGUCGUGGaagu -5'
6636 3' -62.2 NC_001847.1 + 26785 0.66 0.619867
Target:  5'- cGCGCGCC-CUCCugC-GCGCCg--- -3'
miRNA:   3'- cCGCGCGGcGGGGugGuCGUGGaagu -5'
6636 3' -62.2 NC_001847.1 + 104129 0.66 0.619867
Target:  5'- cGGCGCGCgCGCgCCGgCAaCGCCg--- -3'
miRNA:   3'- -CCGCGCG-GCGgGGUgGUcGUGGaagu -5'
6636 3' -62.2 NC_001847.1 + 2342 0.66 0.619867
Target:  5'- cGGCgGCucCCGCCgCGCCGGCccgGCCgcgUCGg -3'
miRNA:   3'- -CCG-CGc-GGCGGgGUGGUCG---UGGa--AGU- -5'
6636 3' -62.2 NC_001847.1 + 102068 0.66 0.619867
Target:  5'- uGCGCGCCGCgcagaaaguaCUGCCgcAGCGCCU-CGg -3'
miRNA:   3'- cCGCGCGGCGg---------GGUGG--UCGUGGAaGU- -5'
6636 3' -62.2 NC_001847.1 + 30207 0.66 0.619867
Target:  5'- cGGCGCGCgCGCCgaaGCCGcgcGCGCCc--- -3'
miRNA:   3'- -CCGCGCG-GCGGgg-UGGU---CGUGGaagu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.