miRNA display CGI


Results 1 - 20 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6636 5' -55.3 NC_001847.1 + 129203 0.66 0.900923
Target:  5'- ---gAAGCAGCgGGCGG-GCCcgUCGUc -3'
miRNA:   3'- acaaUUCGUCGaCCGUCuCGG--AGCGc -5'
6636 5' -55.3 NC_001847.1 + 33980 0.66 0.900923
Target:  5'- ---cGGGCGcGCUGGCcGGGCUgggcccagccuUCGCGg -3'
miRNA:   3'- acaaUUCGU-CGACCGuCUCGG-----------AGCGC- -5'
6636 5' -55.3 NC_001847.1 + 53831 0.66 0.900923
Target:  5'- -----cGCGGCUGGCGGcggcagcggcGGCgCUgGCGg -3'
miRNA:   3'- acaauuCGUCGACCGUC----------UCG-GAgCGC- -5'
6636 5' -55.3 NC_001847.1 + 46503 0.66 0.900923
Target:  5'- ----cAGCAcGCUGaGCAG-GCuCUCGCGc -3'
miRNA:   3'- acaauUCGU-CGAC-CGUCuCG-GAGCGC- -5'
6636 5' -55.3 NC_001847.1 + 18330 0.66 0.900923
Target:  5'- cGcgGAGCAGCUGcCGGGcGCagUCGCGg -3'
miRNA:   3'- aCaaUUCGUCGACcGUCU-CGg-AGCGC- -5'
6636 5' -55.3 NC_001847.1 + 26390 0.66 0.900923
Target:  5'- ---gAAGCAGCgGGCGG-GCCcgUCGUc -3'
miRNA:   3'- acaaUUCGUCGaCCGUCuCGG--AGCGc -5'
6636 5' -55.3 NC_001847.1 + 30361 0.66 0.900923
Target:  5'- gGggAGGC-GCUGGCGGcGCCgcccgGCGa -3'
miRNA:   3'- aCaaUUCGuCGACCGUCuCGGag---CGC- -5'
6636 5' -55.3 NC_001847.1 + 62005 0.66 0.900923
Target:  5'- ---aGAGCGGC--GCGGGGCCcUGCGg -3'
miRNA:   3'- acaaUUCGUCGacCGUCUCGGaGCGC- -5'
6636 5' -55.3 NC_001847.1 + 16741 0.66 0.900923
Target:  5'- ----cAGCAGCaccaGCAGAGCgaUCGCGa -3'
miRNA:   3'- acaauUCGUCGac--CGUCUCGg-AGCGC- -5'
6636 5' -55.3 NC_001847.1 + 133174 0.66 0.900923
Target:  5'- gGggAGGC-GCUGGCGGcGCCgcccgGCGa -3'
miRNA:   3'- aCaaUUCGuCGACCGUCuCGGag---CGC- -5'
6636 5' -55.3 NC_001847.1 + 102844 0.66 0.900923
Target:  5'- cGUUccgcGGCGGCgucGCGGGGCCgcgccaCGCGg -3'
miRNA:   3'- aCAAu---UCGUCGac-CGUCUCGGa-----GCGC- -5'
6636 5' -55.3 NC_001847.1 + 46678 0.66 0.900923
Target:  5'- gGgcGAGCAGCacgcgcgcgcGGuCGGGGCC-CGCGg -3'
miRNA:   3'- aCaaUUCGUCGa---------CC-GUCUCGGaGCGC- -5'
6636 5' -55.3 NC_001847.1 + 81489 0.66 0.894247
Target:  5'- aGUUGAGCGGCccGGguGcccGGUCuuugUCGCGg -3'
miRNA:   3'- aCAAUUCGUCGa-CCguC---UCGG----AGCGC- -5'
6636 5' -55.3 NC_001847.1 + 34279 0.66 0.894247
Target:  5'- ----cGGCGGCUgGGCGccGCgCUCGCGg -3'
miRNA:   3'- acaauUCGUCGA-CCGUcuCG-GAGCGC- -5'
6636 5' -55.3 NC_001847.1 + 55505 0.66 0.894247
Target:  5'- cGUgggcccuGCuGCUGGCGGcGCCcgcCGCGg -3'
miRNA:   3'- aCAauu----CGuCGACCGUCuCGGa--GCGC- -5'
6636 5' -55.3 NC_001847.1 + 81052 0.66 0.894247
Target:  5'- ---gGGGCgacgugGGCgugGGCGGGGCCUgGCu -3'
miRNA:   3'- acaaUUCG------UCGa--CCGUCUCGGAgCGc -5'
6636 5' -55.3 NC_001847.1 + 114422 0.66 0.894247
Target:  5'- gGUagAAGCGGUccgccaGCGGGGCCUCGUc -3'
miRNA:   3'- aCAa-UUCGUCGac----CGUCUCGGAGCGc -5'
6636 5' -55.3 NC_001847.1 + 14192 0.66 0.894247
Target:  5'- ---gGAGgGGCUGGCGGcgGGgCUgGCGg -3'
miRNA:   3'- acaaUUCgUCGACCGUC--UCgGAgCGC- -5'
6636 5' -55.3 NC_001847.1 + 107701 0.66 0.887328
Target:  5'- -----uGCGGUUGGCGGcGC-UCGCGg -3'
miRNA:   3'- acaauuCGUCGACCGUCuCGgAGCGC- -5'
6636 5' -55.3 NC_001847.1 + 37937 0.66 0.887328
Target:  5'- ---gGAGCAGCUGuCGGcGCUgaUCGCGa -3'
miRNA:   3'- acaaUUCGUCGACcGUCuCGG--AGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.