miRNA display CGI


Results 1 - 20 of 384 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6637 3' -58.3 NC_001847.1 + 115794 0.66 0.823919
Target:  5'- uCGcGGAGccgcUGCGgcucCGCgCGCUGCGCUGCg -3'
miRNA:   3'- -GCuUCUC----AUGCa---GCG-GCGGCGCGGUG- -5'
6637 3' -58.3 NC_001847.1 + 115878 0.66 0.823919
Target:  5'- --cAGAcGcUGCGcCGCCgGCuCGCGCCGCu -3'
miRNA:   3'- gcuUCU-C-AUGCaGCGG-CG-GCGCGGUG- -5'
6637 3' -58.3 NC_001847.1 + 131205 0.66 0.823919
Target:  5'- ---uGGGUcGCGcUCGCCGcCCGCuGCCAg -3'
miRNA:   3'- gcuuCUCA-UGC-AGCGGC-GGCG-CGGUg -5'
6637 3' -58.3 NC_001847.1 + 113172 0.66 0.823919
Target:  5'- gCGAGGGGgcCGcCGCCGaaagccccccCCGgUGCCGCc -3'
miRNA:   3'- -GCUUCUCauGCaGCGGC----------GGC-GCGGUG- -5'
6637 3' -58.3 NC_001847.1 + 98110 0.66 0.823919
Target:  5'- aGGcuAGAGUGCGagcccggCGCC-CCGCuCCGCa -3'
miRNA:   3'- gCU--UCUCAUGCa------GCGGcGGCGcGGUG- -5'
6637 3' -58.3 NC_001847.1 + 30359 0.66 0.823919
Target:  5'- cCGggGAGg----CGCUgGCgGCGCCGCc -3'
miRNA:   3'- -GCuuCUCaugcaGCGG-CGgCGCGGUG- -5'
6637 3' -58.3 NC_001847.1 + 49156 0.66 0.823919
Target:  5'- ---------aGUUGuuGCCGCGCCGCg -3'
miRNA:   3'- gcuucucaugCAGCggCGGCGCGGUG- -5'
6637 3' -58.3 NC_001847.1 + 105099 0.66 0.823919
Target:  5'- gCGccGGcaACGUCGCCcacgGCCGCgGCCAUa -3'
miRNA:   3'- -GCuuCUcaUGCAGCGG----CGGCG-CGGUG- -5'
6637 3' -58.3 NC_001847.1 + 63241 0.66 0.823919
Target:  5'- gCGccGGGUcCGcCGCUGCaGCGCCAUc -3'
miRNA:   3'- -GCuuCUCAuGCaGCGGCGgCGCGGUG- -5'
6637 3' -58.3 NC_001847.1 + 10359 0.66 0.823919
Target:  5'- gCGAGGGGgcCGcCGCCGaaagccccccCCGgUGCCGCc -3'
miRNA:   3'- -GCUUCUCauGCaGCGGC----------GGC-GCGGUG- -5'
6637 3' -58.3 NC_001847.1 + 133172 0.66 0.823919
Target:  5'- cCGggGAGg----CGCUgGCgGCGCCGCc -3'
miRNA:   3'- -GCuuCUCaugcaGCGG-CGgCGCGGUG- -5'
6637 3' -58.3 NC_001847.1 + 56611 0.66 0.823078
Target:  5'- uCGAAGAGgcCGagGCCGCggucgagCGCGuCUACc -3'
miRNA:   3'- -GCUUCUCauGCagCGGCG-------GCGC-GGUG- -5'
6637 3' -58.3 NC_001847.1 + 112329 0.66 0.815438
Target:  5'- gCGggGA--GCGgcCGCCGCCG-GcCCGCa -3'
miRNA:   3'- -GCuuCUcaUGCa-GCGGCGGCgC-GGUG- -5'
6637 3' -58.3 NC_001847.1 + 30791 0.66 0.815438
Target:  5'- ---cGGGcGCGgaCGCCGCCGCgucuGCCGCc -3'
miRNA:   3'- gcuuCUCaUGCa-GCGGCGGCG----CGGUG- -5'
6637 3' -58.3 NC_001847.1 + 75477 0.66 0.815438
Target:  5'- gCGAcaaAGAGgcCGUCGagGCgGCGCCGg -3'
miRNA:   3'- -GCU---UCUCauGCAGCggCGgCGCGGUg -5'
6637 3' -58.3 NC_001847.1 + 71939 0.66 0.815438
Target:  5'- -------cGCGUaaaCGgCGCCGCGCCGCa -3'
miRNA:   3'- gcuucucaUGCA---GCgGCGGCGCGGUG- -5'
6637 3' -58.3 NC_001847.1 + 99629 0.66 0.815438
Target:  5'- cCGAGGAugcgcucgGCGcgCGCCGUggccuccgcgCGCGCCGCc -3'
miRNA:   3'- -GCUUCUca------UGCa-GCGGCG----------GCGCGGUG- -5'
6637 3' -58.3 NC_001847.1 + 71175 0.66 0.815438
Target:  5'- gCGAacAGGGUgucgcgcaGCGcCGgCGCCGgCGCCAUu -3'
miRNA:   3'- -GCU--UCUCA--------UGCaGCgGCGGC-GCGGUG- -5'
6637 3' -58.3 NC_001847.1 + 69573 0.66 0.815438
Target:  5'- uGggGGGccACGUgGCCGUgUGaCGCCACc -3'
miRNA:   3'- gCuuCUCa-UGCAgCGGCG-GC-GCGGUG- -5'
6637 3' -58.3 NC_001847.1 + 55913 0.66 0.815438
Target:  5'- uCGggGAGcGCGcccgugaucCGCgGCCGgCGUCGCg -3'
miRNA:   3'- -GCuuCUCaUGCa--------GCGgCGGC-GCGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.