miRNA display CGI


Results 1 - 20 of 193 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6637 5' -53.4 NC_001847.1 + 124647 0.66 0.960175
Target:  5'- -aGCAGCGCGggGCcgucggggaagcccaGCUCGgCCUg-- -3'
miRNA:   3'- ggUGUCGUGCuuUG---------------UGAGCgGGAgaa -5'
6637 5' -53.4 NC_001847.1 + 73862 0.66 0.960175
Target:  5'- gCCGCGguGCGCGggGCGCgucaguuccgccggCGCCC-Cg- -3'
miRNA:   3'- -GGUGU--CGUGCuuUGUGa-------------GCGGGaGaa -5'
6637 5' -53.4 NC_001847.1 + 26400 0.66 0.958682
Target:  5'- gCGCGGCAgGAAcgccgucgcgucGCAgUCGCCCa--- -3'
miRNA:   3'- gGUGUCGUgCUU------------UGUgAGCGGGagaa -5'
6637 5' -53.4 NC_001847.1 + 10592 0.66 0.958682
Target:  5'- cCCGCGcGCGCGGgccGGCGCcggcccgCGCCCUgCUg -3'
miRNA:   3'- -GGUGU-CGUGCU---UUGUGa------GCGGGA-GAa -5'
6637 5' -53.4 NC_001847.1 + 16468 0.66 0.958682
Target:  5'- cCCGCGGCGCaGAGCGCggacaCCUCUc -3'
miRNA:   3'- -GGUGUCGUGcUUUGUGagcg-GGAGAa -5'
6637 5' -53.4 NC_001847.1 + 113405 0.66 0.958682
Target:  5'- cCCGCGcGCGCGGgccGGCGCcggcccgCGCCCUgCUg -3'
miRNA:   3'- -GGUGU-CGUGCU---UUGUGa------GCGGGA-GAa -5'
6637 5' -53.4 NC_001847.1 + 98164 0.66 0.958682
Target:  5'- -aGCAGCACGccgcGGCGCgcccaGUCCUCUa -3'
miRNA:   3'- ggUGUCGUGCu---UUGUGag---CGGGAGAa -5'
6637 5' -53.4 NC_001847.1 + 62089 0.66 0.958682
Target:  5'- cCCGCGGCGCGuuGC-UUCGCCa---- -3'
miRNA:   3'- -GGUGUCGUGCuuUGuGAGCGGgagaa -5'
6637 5' -53.4 NC_001847.1 + 78312 0.66 0.958682
Target:  5'- gCGCGGCGCGgcGCGCgCGCCg---- -3'
miRNA:   3'- gGUGUCGUGCuuUGUGaGCGGgagaa -5'
6637 5' -53.4 NC_001847.1 + 45206 0.66 0.958682
Target:  5'- cUCGCAGCGCGA-GCGC-CGCCg---- -3'
miRNA:   3'- -GGUGUCGUGCUuUGUGaGCGGgagaa -5'
6637 5' -53.4 NC_001847.1 + 102258 0.66 0.958682
Target:  5'- gCGCGGCGC---GCACcgUGCCCUCc- -3'
miRNA:   3'- gGUGUCGUGcuuUGUGa-GCGGGAGaa -5'
6637 5' -53.4 NC_001847.1 + 43132 0.66 0.958302
Target:  5'- -gACGGCGCGGgcccgcgGGCGCUgCGCCCg--- -3'
miRNA:   3'- ggUGUCGUGCU-------UUGUGA-GCGGGagaa -5'
6637 5' -53.4 NC_001847.1 + 97887 0.66 0.954782
Target:  5'- uCgGCGGCGCGGAugGCgaacagcgCGCCgUCc- -3'
miRNA:   3'- -GgUGUCGUGCUUugUGa-------GCGGgAGaa -5'
6637 5' -53.4 NC_001847.1 + 81966 0.66 0.954782
Target:  5'- gCCACAGC-CGGGuCGCagCGCCCg--- -3'
miRNA:   3'- -GGUGUCGuGCUUuGUGa-GCGGGagaa -5'
6637 5' -53.4 NC_001847.1 + 108508 0.66 0.954782
Target:  5'- aCGCAGCGCuuGGAGCACgagggcuuucgCGCCCa--- -3'
miRNA:   3'- gGUGUCGUG--CUUUGUGa----------GCGGGagaa -5'
6637 5' -53.4 NC_001847.1 + 107340 0.66 0.954782
Target:  5'- gCCGgGGCGCGAAugGCcagaGCCCg--- -3'
miRNA:   3'- -GGUgUCGUGCUUugUGag--CGGGagaa -5'
6637 5' -53.4 NC_001847.1 + 40588 0.66 0.954782
Target:  5'- gCGCuGCGCuugcuuuuggGGuAGCGCUCGCCCUUUc -3'
miRNA:   3'- gGUGuCGUG----------CU-UUGUGAGCGGGAGAa -5'
6637 5' -53.4 NC_001847.1 + 69380 0.66 0.954782
Target:  5'- aCACGGCGCGcAGCuugCGCCCg--- -3'
miRNA:   3'- gGUGUCGUGCuUUGugaGCGGGagaa -5'
6637 5' -53.4 NC_001847.1 + 18692 0.66 0.954782
Target:  5'- aCCGCGccGCGCGugcgccAGCGCccacCGCCCUCg- -3'
miRNA:   3'- -GGUGU--CGUGCu-----UUGUGa---GCGGGAGaa -5'
6637 5' -53.4 NC_001847.1 + 32526 0.66 0.954782
Target:  5'- aCGCGGCugucggagGCGAuGCGCgcgcaGCCCUCg- -3'
miRNA:   3'- gGUGUCG--------UGCUuUGUGag---CGGGAGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.