miRNA display CGI


Results 1 - 20 of 923 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6638 3' -57.7 NC_001847.1 + 17491 0.66 0.849479
Target:  5'- --aGCGACGUCCCGuagagcGCGUAgUCGGa -3'
miRNA:   3'- cggCGCUGCGGGGCu-----UGCGUgAGUUg -5'
6638 3' -57.7 NC_001847.1 + 123463 0.66 0.849479
Target:  5'- gGCCcgGCGACgGCCgCC--GCGgGCUCGGCu -3'
miRNA:   3'- -CGG--CGCUG-CGG-GGcuUGCgUGAGUUG- -5'
6638 3' -57.7 NC_001847.1 + 15625 0.66 0.849479
Target:  5'- gGCgGaaCGACGCCCCcGugGCGCaugaaccaguagUCGACu -3'
miRNA:   3'- -CGgC--GCUGCGGGGcUugCGUG------------AGUUG- -5'
6638 3' -57.7 NC_001847.1 + 5812 0.66 0.849479
Target:  5'- gGCCGa-ACGcCCCCGGcccCGCGCcCGGCa -3'
miRNA:   3'- -CGGCgcUGC-GGGGCUu--GCGUGaGUUG- -5'
6638 3' -57.7 NC_001847.1 + 239 0.66 0.849479
Target:  5'- gGCCuCG-CGCCCCG-ACGC-C-CGGCg -3'
miRNA:   3'- -CGGcGCuGCGGGGCuUGCGuGaGUUG- -5'
6638 3' -57.7 NC_001847.1 + 72778 0.66 0.849479
Target:  5'- cGgCGCGGCGUgCCUGGGCGaaauUUCGGCg -3'
miRNA:   3'- -CgGCGCUGCG-GGGCUUGCgu--GAGUUG- -5'
6638 3' -57.7 NC_001847.1 + 82401 0.66 0.849479
Target:  5'- gGCCGCu-UGUCCgGGACGCccauCUCAAa -3'
miRNA:   3'- -CGGCGcuGCGGGgCUUGCGu---GAGUUg -5'
6638 3' -57.7 NC_001847.1 + 121795 0.66 0.849479
Target:  5'- aGCCG-GGCGCCuCUGAgugccguaGCGCcagcagguacaGCUCGGCc -3'
miRNA:   3'- -CGGCgCUGCGG-GGCU--------UGCG-----------UGAGUUG- -5'
6638 3' -57.7 NC_001847.1 + 113941 0.66 0.849479
Target:  5'- gGUCGCGgcggcgucuccuACGCCgCCGGGCGCG-UCGccGCa -3'
miRNA:   3'- -CGGCGC------------UGCGG-GGCUUGCGUgAGU--UG- -5'
6638 3' -57.7 NC_001847.1 + 101370 0.66 0.849479
Target:  5'- cCCGCGAaGCCCUGcAGCgGCAg-CAACa -3'
miRNA:   3'- cGGCGCUgCGGGGC-UUG-CGUgaGUUG- -5'
6638 3' -57.7 NC_001847.1 + 30114 0.66 0.849479
Target:  5'- cGCCGCGGCGCUggcggccuacugCCGccccgaggucgcGGCGCgGCUCGc- -3'
miRNA:   3'- -CGGCGCUGCGG------------GGC------------UUGCG-UGAGUug -5'
6638 3' -57.7 NC_001847.1 + 47858 0.66 0.849478
Target:  5'- gGUCGCG-UGCUgCgCGGGCGCGCgCAGCg -3'
miRNA:   3'- -CGGCGCuGCGG-G-GCUUGCGUGaGUUG- -5'
6638 3' -57.7 NC_001847.1 + 73778 0.66 0.849478
Target:  5'- uCCGCGACGCCUCGccgGUGCggGGCu -3'
miRNA:   3'- cGGCGCUGCGGGGCuugCGUGagUUG- -5'
6638 3' -57.7 NC_001847.1 + 132927 0.66 0.849478
Target:  5'- cGCCGCGGCGCUggcggccuacugCCGccccgaggucgcGGCGCgGCUCGc- -3'
miRNA:   3'- -CGGCGCUGCGG------------GGC------------UUGCG-UGAGUug -5'
6638 3' -57.7 NC_001847.1 + 101379 0.66 0.849478
Target:  5'- cGCCGCGGgggcUGCCCgCG-GCGcCGC-CGGCa -3'
miRNA:   3'- -CGGCGCU----GCGGG-GCuUGC-GUGaGUUG- -5'
6638 3' -57.7 NC_001847.1 + 53012 0.66 0.849478
Target:  5'- aGCCgacaGCGGCGgCCgcuGCGCGCUCGGg -3'
miRNA:   3'- -CGG----CGCUGCgGGgcuUGCGUGAGUUg -5'
6638 3' -57.7 NC_001847.1 + 8057 0.66 0.849478
Target:  5'- aGCCGCG-CGgCCCGcGCGCAg----- -3'
miRNA:   3'- -CGGCGCuGCgGGGCuUGCGUgaguug -5'
6638 3' -57.7 NC_001847.1 + 108625 0.66 0.849478
Target:  5'- gGCCGa-ACGcCCCCGGcccCGCGCcCGGCa -3'
miRNA:   3'- -CGGCgcUGC-GGGGCUu--GCGUGaGUUG- -5'
6638 3' -57.7 NC_001847.1 + 44687 0.66 0.849478
Target:  5'- aGCCGCGGauggGCCgCgCGGaccGCGCGCUUAu- -3'
miRNA:   3'- -CGGCGCUg---CGG-G-GCU---UGCGUGAGUug -5'
6638 3' -57.7 NC_001847.1 + 25774 0.66 0.849478
Target:  5'- aGCCcaGCuGCGCCCauuccGCGUGCUCGGCc -3'
miRNA:   3'- -CGG--CGcUGCGGGgcu--UGCGUGAGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.