miRNA display CGI


Results 21 - 40 of 923 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6638 3' -57.7 NC_001847.1 + 93526 0.66 0.849478
Target:  5'- cGCC-CGGCgGCCCCGGA-GCGCcCGGg -3'
miRNA:   3'- -CGGcGCUG-CGGGGCUUgCGUGaGUUg -5'
6638 3' -57.7 NC_001847.1 + 132927 0.66 0.849478
Target:  5'- cGCCGCGGCGCUggcggccuacugCCGccccgaggucgcGGCGCgGCUCGc- -3'
miRNA:   3'- -CGGCGCUGCGG------------GGC------------UUGCG-UGAGUug -5'
6638 3' -57.7 NC_001847.1 + 58040 0.66 0.849478
Target:  5'- cGCUGCuGGCGaCCCGGcugACGCAgCUCGc- -3'
miRNA:   3'- -CGGCG-CUGCgGGGCU---UGCGU-GAGUug -5'
6638 3' -57.7 NC_001847.1 + 116470 0.66 0.849478
Target:  5'- uGCUGCGGgGCCUCGcguaccUGCACUCc-- -3'
miRNA:   3'- -CGGCGCUgCGGGGCuu----GCGUGAGuug -5'
6638 3' -57.7 NC_001847.1 + 108625 0.66 0.849478
Target:  5'- gGCCGa-ACGcCCCCGGcccCGCGCcCGGCa -3'
miRNA:   3'- -CGGCgcUGC-GGGGCUu--GCGUGaGUUG- -5'
6638 3' -57.7 NC_001847.1 + 8057 0.66 0.849478
Target:  5'- aGCCGCG-CGgCCCGcGCGCAg----- -3'
miRNA:   3'- -CGGCGCuGCgGGGCuUGCGUgaguug -5'
6638 3' -57.7 NC_001847.1 + 116808 0.66 0.849478
Target:  5'- aCCGCGACuGCgCCCGGcaGCuGCUCcGCg -3'
miRNA:   3'- cGGCGCUG-CG-GGGCUugCG-UGAGuUG- -5'
6638 3' -57.7 NC_001847.1 + 105787 0.66 0.847113
Target:  5'- cCCGCGGuCGCCgcuguuuucaacggCCGcccGCGCACUCGc- -3'
miRNA:   3'- cGGCGCU-GCGG--------------GGCu--UGCGUGAGUug -5'
6638 3' -57.7 NC_001847.1 + 35653 0.66 0.847113
Target:  5'- aCCGCGcCGCCUCGGcggccgacgucgugACGCAagCGGCg -3'
miRNA:   3'- cGGCGCuGCGGGGCU--------------UGCGUgaGUUG- -5'
6638 3' -57.7 NC_001847.1 + 48203 0.66 0.847113
Target:  5'- gGCgCGCGGCGCUgcugUCGAAguacacgcagagcuCGUugUCGACg -3'
miRNA:   3'- -CG-GCGCUGCGG----GGCUU--------------GCGugAGUUG- -5'
6638 3' -57.7 NC_001847.1 + 70409 0.66 0.844731
Target:  5'- gGCCGgGGUGUCCgGAaugucagcggccgaaGCGUugUCGACg -3'
miRNA:   3'- -CGGCgCUGCGGGgCU---------------UGCGugAGUUG- -5'
6638 3' -57.7 NC_001847.1 + 125107 0.66 0.841529
Target:  5'- gGCCGUGACGaacgcggagCCGGugGCGaugCAGCg -3'
miRNA:   3'- -CGGCGCUGCgg-------GGCUugCGUga-GUUG- -5'
6638 3' -57.7 NC_001847.1 + 69893 0.66 0.841529
Target:  5'- gGCCGCGG-GCCCgGGugGCGgaaaAGCg -3'
miRNA:   3'- -CGGCGCUgCGGGgCUugCGUgag-UUG- -5'
6638 3' -57.7 NC_001847.1 + 92804 0.66 0.841529
Target:  5'- cGCCGCcGCGCacaCGGGCGCcCaCAGCa -3'
miRNA:   3'- -CGGCGcUGCGgg-GCUUGCGuGaGUUG- -5'
6638 3' -57.7 NC_001847.1 + 119771 0.66 0.841529
Target:  5'- cGCCGac-CGCCCCGAAgGCuggccgagcCUCGAa -3'
miRNA:   3'- -CGGCgcuGCGGGGCUUgCGu--------GAGUUg -5'
6638 3' -57.7 NC_001847.1 + 102155 0.66 0.841529
Target:  5'- aCgGCGGCGCggCCCGc-CGCaaGCUCAGCc -3'
miRNA:   3'- cGgCGCUGCG--GGGCuuGCG--UGAGUUG- -5'
6638 3' -57.7 NC_001847.1 + 28631 0.66 0.841529
Target:  5'- gGCCGCGGgGCCCgCGGcCGUGUUCGu- -3'
miRNA:   3'- -CGGCGCUgCGGG-GCUuGCGUGAGUug -5'
6638 3' -57.7 NC_001847.1 + 75799 0.66 0.841529
Target:  5'- cGCCGCucCGCCCCcGAUGCcggGCUgguaCGGCg -3'
miRNA:   3'- -CGGCGcuGCGGGGcUUGCG---UGA----GUUG- -5'
6638 3' -57.7 NC_001847.1 + 22294 0.66 0.841529
Target:  5'- gGCCGUGACGaacgcggagCCGGugGCGaugCAGCg -3'
miRNA:   3'- -CGGCGCUGCgg-------GGCUugCGUga-GUUG- -5'
6638 3' -57.7 NC_001847.1 + 81822 0.66 0.841529
Target:  5'- uGCgGCGugGUCCaggCGAgguccagcGCGUACgUCAGCg -3'
miRNA:   3'- -CGgCGCugCGGG---GCU--------UGCGUG-AGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.