miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6638 5' -57.2 NC_001847.1 + 68865 0.66 0.844853
Target:  5'- -gGCGGCGUGCGCCgggCCgaagAGGccUCc- -3'
miRNA:   3'- gaCGUCGCACGCGGa--GG----UCCauAGcu -5'
6638 5' -57.2 NC_001847.1 + 3971 0.66 0.844853
Target:  5'- -gGCGGCGaggGCGCCgggggCCGGGcgcgCGGc -3'
miRNA:   3'- gaCGUCGCa--CGCGGa----GGUCCaua-GCU- -5'
6638 5' -57.2 NC_001847.1 + 13035 0.66 0.844853
Target:  5'- cCUGCAGCGUcagcgccaacuGCGUCUCCucgucgccGGcGUCGc -3'
miRNA:   3'- -GACGUCGCA-----------CGCGGAGGu-------CCaUAGCu -5'
6638 5' -57.2 NC_001847.1 + 102581 0.66 0.844853
Target:  5'- -aGCGGCGggcgGCGCCaUCCugcuGGg--CGAc -3'
miRNA:   3'- gaCGUCGCa---CGCGG-AGGu---CCauaGCU- -5'
6638 5' -57.2 NC_001847.1 + 35770 0.66 0.844853
Target:  5'- -cGCAGUGUGUGCUaggCUGGGUcgCa- -3'
miRNA:   3'- gaCGUCGCACGCGGa--GGUCCAuaGcu -5'
6638 5' -57.2 NC_001847.1 + 101803 0.66 0.836672
Target:  5'- gUGCAGCa-GCGCCacCCAGGccgCGAg -3'
miRNA:   3'- gACGUCGcaCGCGGa-GGUCCauaGCU- -5'
6638 5' -57.2 NC_001847.1 + 3162 0.66 0.836672
Target:  5'- -cGCGGCGgGcCGCCUCCAGcGccUCGc -3'
miRNA:   3'- gaCGUCGCaC-GCGGAGGUC-CauAGCu -5'
6638 5' -57.2 NC_001847.1 + 105975 0.66 0.836672
Target:  5'- -cGCGGCGgGcCGCCUCCAGcGccUCGc -3'
miRNA:   3'- gaCGUCGCaC-GCGGAGGUC-CauAGCu -5'
6638 5' -57.2 NC_001847.1 + 113115 0.66 0.835843
Target:  5'- -cGCAcGCuGUGCGCUUCCAcGGUcgccggcGUCGu -3'
miRNA:   3'- gaCGU-CG-CACGCGGAGGU-CCA-------UAGCu -5'
6638 5' -57.2 NC_001847.1 + 68934 0.66 0.828303
Target:  5'- -cGCGGCGgccgcgggcUGCGCCUCCAGccaggCGu -3'
miRNA:   3'- gaCGUCGC---------ACGCGGAGGUCcaua-GCu -5'
6638 5' -57.2 NC_001847.1 + 100594 0.66 0.819754
Target:  5'- gCUGCAGCGgccgaGCaGCCcggCCAGGc-UCGGg -3'
miRNA:   3'- -GACGUCGCa----CG-CGGa--GGUCCauAGCU- -5'
6638 5' -57.2 NC_001847.1 + 2146 0.66 0.819754
Target:  5'- ---aGGCGaGCGCCgggcgCCAGGgcUCGGg -3'
miRNA:   3'- gacgUCGCaCGCGGa----GGUCCauAGCU- -5'
6638 5' -57.2 NC_001847.1 + 77255 0.66 0.819754
Target:  5'- -cGgGGCGguUGCGCC-CCGGGcGUCGu -3'
miRNA:   3'- gaCgUCGC--ACGCGGaGGUCCaUAGCu -5'
6638 5' -57.2 NC_001847.1 + 104959 0.66 0.819754
Target:  5'- ---aGGCGaGCGCCgggcgCCAGGgcUCGGg -3'
miRNA:   3'- gacgUCGCaCGCGGa----GGUCCauAGCU- -5'
6638 5' -57.2 NC_001847.1 + 87071 0.66 0.819754
Target:  5'- -cGCGGCGUGCGCCcCCGccuuUCGc -3'
miRNA:   3'- gaCGUCGCACGCGGaGGUccauAGCu -5'
6638 5' -57.2 NC_001847.1 + 16215 0.66 0.811033
Target:  5'- aUGCGGCGuUGCaGCCUCCGcGUccCGGc -3'
miRNA:   3'- gACGUCGC-ACG-CGGAGGUcCAuaGCU- -5'
6638 5' -57.2 NC_001847.1 + 69145 0.66 0.811033
Target:  5'- -cGCGGCGUcCGCCUUCGGGc--UGAa -3'
miRNA:   3'- gaCGUCGCAcGCGGAGGUCCauaGCU- -5'
6638 5' -57.2 NC_001847.1 + 61335 0.66 0.808384
Target:  5'- gCUGCagcgcggcgaccacGGCGUGCGCUUCCAGcgccccgcgcucGUAgCGGc -3'
miRNA:   3'- -GACG--------------UCGCACGCGGAGGUC------------CAUaGCU- -5'
6638 5' -57.2 NC_001847.1 + 101380 0.67 0.793107
Target:  5'- cCUGCAGCGgcagcaacaGCGCgUCCAGGc----- -3'
miRNA:   3'- -GACGUCGCa--------CGCGgAGGUCCauagcu -5'
6638 5' -57.2 NC_001847.1 + 48181 0.67 0.78392
Target:  5'- -gGCGGCGUccugcugugccGCGCCggcggCCAGGgc-CGAg -3'
miRNA:   3'- gaCGUCGCA-----------CGCGGa----GGUCCauaGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.