miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6639 3' -60.7 NC_001847.1 + 18266 0.66 0.709553
Target:  5'- cGGGUCA-GCCgGUCaGUGGggCUGgGUg -3'
miRNA:   3'- cCCCGGUaCGGgCAG-CACCa-GACgCA- -5'
6639 3' -60.7 NC_001847.1 + 90884 0.66 0.709553
Target:  5'- cGGGGCCGuUGCCCaGUCGccGG-C-GCGc -3'
miRNA:   3'- -CCCCGGU-ACGGG-CAGCa-CCaGaCGCa -5'
6639 3' -60.7 NC_001847.1 + 118813 0.66 0.699798
Target:  5'- -aGGCCGUGCCgGUCGUcuaGGgc-GCGg -3'
miRNA:   3'- ccCCGGUACGGgCAGCA---CCagaCGCa -5'
6639 3' -60.7 NC_001847.1 + 75020 0.66 0.689989
Target:  5'- gGGGGCCAgcgggcagaagGCgCCGUCGgUGGgcgggaggCUGCc- -3'
miRNA:   3'- -CCCCGGUa----------CG-GGCAGC-ACCa-------GACGca -5'
6639 3' -60.7 NC_001847.1 + 37606 0.66 0.689006
Target:  5'- gGGGGCCGgcccgcgcucuuuUGCCCGaCG-GGgagCaGCGUg -3'
miRNA:   3'- -CCCCGGU-------------ACGGGCaGCaCCa--GaCGCA- -5'
6639 3' -60.7 NC_001847.1 + 66687 0.66 0.680135
Target:  5'- cGGGGCCccgGCCgCGggCGcGGaccUCUGCGg -3'
miRNA:   3'- -CCCCGGua-CGG-GCa-GCaCC---AGACGCa -5'
6639 3' -60.7 NC_001847.1 + 101157 0.66 0.670244
Target:  5'- uGGGGCCGggGCCgGggcCGgGGUCgggGCGc -3'
miRNA:   3'- -CCCCGGUa-CGGgCa--GCaCCAGa--CGCa -5'
6639 3' -60.7 NC_001847.1 + 44404 0.66 0.660322
Target:  5'- cGGGGCCcgGCCaCGcgccgCGagcGG-CUGCGUu -3'
miRNA:   3'- -CCCCGGuaCGG-GCa----GCa--CCaGACGCA- -5'
6639 3' -60.7 NC_001847.1 + 84632 0.67 0.630461
Target:  5'- cGGGGCCAUGCCg--CGgcugCUGCGc -3'
miRNA:   3'- -CCCCGGUACGGgcaGCaccaGACGCa -5'
6639 3' -60.7 NC_001847.1 + 32997 0.67 0.600609
Target:  5'- cGGGCC--GCgCCGcCGUGGUCgcGCGg -3'
miRNA:   3'- cCCCGGuaCG-GGCaGCACCAGa-CGCa -5'
6639 3' -60.7 NC_001847.1 + 84017 0.68 0.590693
Target:  5'- --cGCCAcGCCUGUgGUGGUCgacgGCGa -3'
miRNA:   3'- cccCGGUaCGGGCAgCACCAGa---CGCa -5'
6639 3' -60.7 NC_001847.1 + 40738 0.68 0.570955
Target:  5'- cGGGCaugGcCCCGUCGcGGUaCUGCGc -3'
miRNA:   3'- cCCCGguaC-GGGCAGCaCCA-GACGCa -5'
6639 3' -60.7 NC_001847.1 + 44057 0.68 0.570955
Target:  5'- cGGGGCCgcccuguucGUGCagCUGUCGUGccugcugcggcGUCUGCGc -3'
miRNA:   3'- -CCCCGG---------UACG--GGCAGCAC-----------CAGACGCa -5'
6639 3' -60.7 NC_001847.1 + 111314 0.68 0.561144
Target:  5'- cGGGGCCGUGCgcgcgcuggaCCGcgagcaGUGGUCgGUGg -3'
miRNA:   3'- -CCCCGGUACG----------GGCag----CACCAGaCGCa -5'
6639 3' -60.7 NC_001847.1 + 100852 0.71 0.422258
Target:  5'- aGGGCCGgagcgccgGCCCGcCGggGGUCgGCGg -3'
miRNA:   3'- cCCCGGUa-------CGGGCaGCa-CCAGaCGCa -5'
6639 3' -60.7 NC_001847.1 + 37479 0.71 0.396987
Target:  5'- cGGGCCcgGCCUGgcagCGgcgGGUCUGgGc -3'
miRNA:   3'- cCCCGGuaCGGGCa---GCa--CCAGACgCa -5'
6639 3' -60.7 NC_001847.1 + 114031 0.72 0.334545
Target:  5'- cGGGGUCAUcacGCCCGgcggCGUGGUgaugGCGUc -3'
miRNA:   3'- -CCCCGGUA---CGGGCa---GCACCAga--CGCA- -5'
6639 3' -60.7 NC_001847.1 + 94417 1.09 0.000919
Target:  5'- cGGGGCCAUGCCCGUCGUGGUCUGCGUg -3'
miRNA:   3'- -CCCCGGUACGGGCAGCACCAGACGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.