miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6639 5' -54.5 NC_001847.1 + 134475 0.66 0.960074
Target:  5'- aCACGCgguccgAGugCGGCUCUUucuucauugUCGGG-CCu -3'
miRNA:   3'- gGUGCG------UCugGCUGAGAG---------AGCUCaGG- -5'
6639 5' -54.5 NC_001847.1 + 8135 0.66 0.960074
Target:  5'- gCGgGCGGGCCGACgagcCUCgCGGGgCUg -3'
miRNA:   3'- gGUgCGUCUGGCUGa---GAGaGCUCaGG- -5'
6639 5' -54.5 NC_001847.1 + 16409 0.66 0.960074
Target:  5'- gCCGCGCGGGgCGAgUguaUCUCuAGUCg -3'
miRNA:   3'- -GGUGCGUCUgGCUgAg--AGAGcUCAGg -5'
6639 5' -54.5 NC_001847.1 + 31662 0.66 0.960074
Target:  5'- aCACGCgguccgAGugCGGCUCUUucuucauugUCGGG-CCu -3'
miRNA:   3'- gGUGCG------UCugGCUGAGAG---------AGCUCaGG- -5'
6639 5' -54.5 NC_001847.1 + 45459 0.66 0.960074
Target:  5'- cCCGCGCAuaccCCGGgUC-CUCGGccauGUCCg -3'
miRNA:   3'- -GGUGCGUcu--GGCUgAGaGAGCU----CAGG- -5'
6639 5' -54.5 NC_001847.1 + 110948 0.66 0.960074
Target:  5'- gCGgGCGGGCCGACgagcCUCgCGGGgCUg -3'
miRNA:   3'- gGUgCGUCUGGCUGa---GAGaGCUCaGG- -5'
6639 5' -54.5 NC_001847.1 + 88336 0.66 0.960074
Target:  5'- gCCGCGCGGGCCuguGCUCgUCUgcCGuAGcCCu -3'
miRNA:   3'- -GGUGCGUCUGGc--UGAG-AGA--GC-UCaGG- -5'
6639 5' -54.5 NC_001847.1 + 1315 0.66 0.956393
Target:  5'- uCCACGaAGuCCGGCUC-CcCGAGcCCc -3'
miRNA:   3'- -GGUGCgUCuGGCUGAGaGaGCUCaGG- -5'
6639 5' -54.5 NC_001847.1 + 41663 0.66 0.956393
Target:  5'- aCGCGCGGcACgCGGCUCUUcaagGAGaUCCu -3'
miRNA:   3'- gGUGCGUC-UG-GCUGAGAGag--CUC-AGG- -5'
6639 5' -54.5 NC_001847.1 + 104128 0.66 0.956392
Target:  5'- uCCACGaAGuCCGGCUC-CcCGAGcCCc -3'
miRNA:   3'- -GGUGCgUCuGGCUGAGaGaGCUCaGG- -5'
6639 5' -54.5 NC_001847.1 + 69100 0.66 0.956392
Target:  5'- gCGCGCGGACgGGCgggccgcgUUCUCGgcguacguGGUCUu -3'
miRNA:   3'- gGUGCGUCUGgCUGa-------GAGAGC--------UCAGG- -5'
6639 5' -54.5 NC_001847.1 + 32964 0.66 0.956392
Target:  5'- gCGCGguGGCCGACUuggcggcugagCUUgcggCGGG-CCg -3'
miRNA:   3'- gGUGCguCUGGCUGA-----------GAGa---GCUCaGG- -5'
6639 5' -54.5 NC_001847.1 + 38015 0.66 0.952487
Target:  5'- gCCACGguGGCgGACUacacgcaguUUCUCGcGG-CCa -3'
miRNA:   3'- -GGUGCguCUGgCUGA---------GAGAGC-UCaGG- -5'
6639 5' -54.5 NC_001847.1 + 25323 0.66 0.952486
Target:  5'- gCGCGCccaaAGGCCGGCUC-C-CGcaucGUCCa -3'
miRNA:   3'- gGUGCG----UCUGGCUGAGaGaGCu---CAGG- -5'
6639 5' -54.5 NC_001847.1 + 77372 0.66 0.952486
Target:  5'- aCGCGUGGcGCCGGCgcccgCUCUCGcucguGGcCCg -3'
miRNA:   3'- gGUGCGUC-UGGCUGa----GAGAGC-----UCaGG- -5'
6639 5' -54.5 NC_001847.1 + 101484 0.66 0.952083
Target:  5'- cCCGCGCGGGCCGcggccacgcgcgcGCgcgC-CUCGcGGUCa -3'
miRNA:   3'- -GGUGCGUCUGGC-------------UGa--GaGAGC-UCAGg -5'
6639 5' -54.5 NC_001847.1 + 49971 0.66 0.948352
Target:  5'- aCGCGCAGGCCGugcacGCcCUCcgCGAGaggagCCc -3'
miRNA:   3'- gGUGCGUCUGGC-----UGaGAGa-GCUCa----GG- -5'
6639 5' -54.5 NC_001847.1 + 41410 0.66 0.947926
Target:  5'- aCCGCGCGGucuagcaGCCGGC-CggugCgaugCGAGUCg -3'
miRNA:   3'- -GGUGCGUC-------UGGCUGaGa---Ga---GCUCAGg -5'
6639 5' -54.5 NC_001847.1 + 19377 0.66 0.943986
Target:  5'- cUCugGCcGAgCCGGCUCcccgCUCGGcUCCg -3'
miRNA:   3'- -GGugCGuCU-GGCUGAGa---GAGCUcAGG- -5'
6639 5' -54.5 NC_001847.1 + 78588 0.66 0.943986
Target:  5'- aUCACGCGG-CCGcGCUCcCUgGAGcugCCg -3'
miRNA:   3'- -GGUGCGUCuGGC-UGAGaGAgCUCa--GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.