miRNA display CGI


Results 1 - 20 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6640 3' -58.6 NC_001847.1 + 87906 0.66 0.778421
Target:  5'- gCUUUGCACaggggcggggCGUGGGGcUGGGCGCg-- -3'
miRNA:   3'- aGAAGCGUG----------GCGCUCC-AUCCGCGgau -5'
6640 3' -58.6 NC_001847.1 + 3965 0.66 0.778421
Target:  5'- ----aGCGCCagcGCGAGGUGGGCcgugagcacGCCa- -3'
miRNA:   3'- agaagCGUGG---CGCUCCAUCCG---------CGGau -5'
6640 3' -58.6 NC_001847.1 + 19186 0.66 0.778421
Target:  5'- ----aGCACgGCGGGGgcGGgGUCUGu -3'
miRNA:   3'- agaagCGUGgCGCUCCauCCgCGGAU- -5'
6640 3' -58.6 NC_001847.1 + 20258 0.66 0.778421
Target:  5'- ---cCGCgagagcgagACgGCGAGGUcGGCGCCg- -3'
miRNA:   3'- agaaGCG---------UGgCGCUCCAuCCGCGGau -5'
6640 3' -58.6 NC_001847.1 + 77636 0.66 0.778421
Target:  5'- aCggCGCGCCGCccgugGAGGccuucgacgcGGGCGCCg- -3'
miRNA:   3'- aGaaGCGUGGCG-----CUCCa---------UCCGCGGau -5'
6640 3' -58.6 NC_001847.1 + 93309 0.66 0.769072
Target:  5'- ---cCGCGCgCGCGuGuGUAGGCGCg-- -3'
miRNA:   3'- agaaGCGUG-GCGCuC-CAUCCGCGgau -5'
6640 3' -58.6 NC_001847.1 + 3844 0.66 0.769072
Target:  5'- -gUUCGCGCCGCcccaGAcGUAgacGGCGCCg- -3'
miRNA:   3'- agAAGCGUGGCG----CUcCAU---CCGCGGau -5'
6640 3' -58.6 NC_001847.1 + 56035 0.66 0.769072
Target:  5'- cCUUUG-ACCGCGAcgacgaccccuGGgAGGCGCCg- -3'
miRNA:   3'- aGAAGCgUGGCGCU-----------CCaUCCGCGGau -5'
6640 3' -58.6 NC_001847.1 + 88299 0.66 0.769072
Target:  5'- --cUUGCGCCGCGGGGgcGGuCGaCUUu -3'
miRNA:   3'- agaAGCGUGGCGCUCCauCC-GC-GGAu -5'
6640 3' -58.6 NC_001847.1 + 63293 0.66 0.769072
Target:  5'- gCUUC-CACCGCuGGGGaGGGCGUg-- -3'
miRNA:   3'- aGAAGcGUGGCG-CUCCaUCCGCGgau -5'
6640 3' -58.6 NC_001847.1 + 86442 0.66 0.769072
Target:  5'- uUCaUCGCGCCGCGcugccuGGacgccgacGGCGCCg- -3'
miRNA:   3'- -AGaAGCGUGGCGCu-----CCau------CCGCGGau -5'
6640 3' -58.6 NC_001847.1 + 114384 0.66 0.769072
Target:  5'- aUCUgCGCGCCGaCGaAGGcgAGGCccGCCUc -3'
miRNA:   3'- -AGAaGCGUGGC-GC-UCCa-UCCG--CGGAu -5'
6640 3' -58.6 NC_001847.1 + 53377 0.66 0.769072
Target:  5'- ----gGCACCGCGAGc---GCGCCUGc -3'
miRNA:   3'- agaagCGUGGCGCUCcaucCGCGGAU- -5'
6640 3' -58.6 NC_001847.1 + 97768 0.66 0.769072
Target:  5'- gUCagCGCACCGcCGGGGaugAGacGCGCCa- -3'
miRNA:   3'- -AGaaGCGUGGC-GCUCCa--UC--CGCGGau -5'
6640 3' -58.6 NC_001847.1 + 70679 0.66 0.759601
Target:  5'- gCUUCGgccccccgcgcCGCCGCGGGcGgcggcggGGGCGCCc- -3'
miRNA:   3'- aGAAGC-----------GUGGCGCUC-Ca------UCCGCGGau -5'
6640 3' -58.6 NC_001847.1 + 86515 0.66 0.759601
Target:  5'- --gUCGCGCgGCG-GcUGGGCGCCc- -3'
miRNA:   3'- agaAGCGUGgCGCuCcAUCCGCGGau -5'
6640 3' -58.6 NC_001847.1 + 81172 0.66 0.759601
Target:  5'- ---cCGCGCCGCucgGAGGgcucgcggcGGCGCCa- -3'
miRNA:   3'- agaaGCGUGGCG---CUCCau-------CCGCGGau -5'
6640 3' -58.6 NC_001847.1 + 115147 0.66 0.759601
Target:  5'- ---gUGCGCUGCucuGGcgGGGCGCCUGa -3'
miRNA:   3'- agaaGCGUGGCGcu-CCa-UCCGCGGAU- -5'
6640 3' -58.6 NC_001847.1 + 60043 0.66 0.750018
Target:  5'- cUCUUCGUcgGgCGCGAGGc-GGCGCg-- -3'
miRNA:   3'- -AGAAGCG--UgGCGCUCCauCCGCGgau -5'
6640 3' -58.6 NC_001847.1 + 51342 0.66 0.750018
Target:  5'- -gUUCGCguGCCGCG-GGUuggcgaacagGGGCGCUUc -3'
miRNA:   3'- agAAGCG--UGGCGCuCCA----------UCCGCGGAu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.