Results 1 - 20 of 117 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
6640 | 3' | -58.6 | NC_001847.1 | + | 56035 | 0.66 | 0.769072 |
Target: 5'- cCUUUG-ACCGCGAcgacgaccccuGGgAGGCGCCg- -3' miRNA: 3'- aGAAGCgUGGCGCU-----------CCaUCCGCGGau -5' |
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6640 | 3' | -58.6 | NC_001847.1 | + | 77636 | 0.66 | 0.778421 |
Target: 5'- aCggCGCGCCGCccgugGAGGccuucgacgcGGGCGCCg- -3' miRNA: 3'- aGaaGCGUGGCG-----CUCCa---------UCCGCGGau -5' |
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6640 | 3' | -58.6 | NC_001847.1 | + | 20258 | 0.66 | 0.778421 |
Target: 5'- ---cCGCgagagcgagACgGCGAGGUcGGCGCCg- -3' miRNA: 3'- agaaGCG---------UGgCGCUCCAuCCGCGGau -5' |
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6640 | 3' | -58.6 | NC_001847.1 | + | 88299 | 0.66 | 0.769072 |
Target: 5'- --cUUGCGCCGCGGGGgcGGuCGaCUUu -3' miRNA: 3'- agaAGCGUGGCGCUCCauCC-GC-GGAu -5' |
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6640 | 3' | -58.6 | NC_001847.1 | + | 3844 | 0.66 | 0.769072 |
Target: 5'- -gUUCGCGCCGCcccaGAcGUAgacGGCGCCg- -3' miRNA: 3'- agAAGCGUGGCG----CUcCAU---CCGCGGau -5' |
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6640 | 3' | -58.6 | NC_001847.1 | + | 19186 | 0.66 | 0.778421 |
Target: 5'- ----aGCACgGCGGGGgcGGgGUCUGu -3' miRNA: 3'- agaagCGUGgCGCUCCauCCgCGGAU- -5' |
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6640 | 3' | -58.6 | NC_001847.1 | + | 3693 | 0.66 | 0.73055 |
Target: 5'- cCUgcgCGCACCaC-AGGUAGGCGCg-- -3' miRNA: 3'- aGAa--GCGUGGcGcUCCAUCCGCGgau -5' |
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6640 | 3' | -58.6 | NC_001847.1 | + | 35564 | 0.66 | 0.740331 |
Target: 5'- ---gCGCgACCGCGAcGaGGGCGCCg- -3' miRNA: 3'- agaaGCG-UGGCGCUcCaUCCGCGGau -5' |
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6640 | 3' | -58.6 | NC_001847.1 | + | 34106 | 0.66 | 0.740331 |
Target: 5'- --cUCGCGCgGCGGcGGagccugcGGCGCCUGc -3' miRNA: 3'- agaAGCGUGgCGCU-CCau-----CCGCGGAU- -5' |
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6640 | 3' | -58.6 | NC_001847.1 | + | 114384 | 0.66 | 0.769072 |
Target: 5'- aUCUgCGCGCCGaCGaAGGcgAGGCccGCCUc -3' miRNA: 3'- -AGAaGCGUGGC-GC-UCCa-UCCG--CGGAu -5' |
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6640 | 3' | -58.6 | NC_001847.1 | + | 3965 | 0.66 | 0.778421 |
Target: 5'- ----aGCGCCagcGCGAGGUGGGCcgugagcacGCCa- -3' miRNA: 3'- agaagCGUGG---CGCUCCAUCCG---------CGGau -5' |
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6640 | 3' | -58.6 | NC_001847.1 | + | 53377 | 0.66 | 0.769072 |
Target: 5'- ----gGCACCGCGAGc---GCGCCUGc -3' miRNA: 3'- agaagCGUGGCGCUCcaucCGCGGAU- -5' |
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6640 | 3' | -58.6 | NC_001847.1 | + | 86515 | 0.66 | 0.759601 |
Target: 5'- --gUCGCGCgGCG-GcUGGGCGCCc- -3' miRNA: 3'- agaAGCGUGgCGCuCcAUCCGCGGau -5' |
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6640 | 3' | -58.6 | NC_001847.1 | + | 85250 | 0.66 | 0.740331 |
Target: 5'- ----gGCGCCaggugcGCGAGGUAGGUgGCCg- -3' miRNA: 3'- agaagCGUGG------CGCUCCAUCCG-CGGau -5' |
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6640 | 3' | -58.6 | NC_001847.1 | + | 82667 | 0.66 | 0.73055 |
Target: 5'- gCggCGCGCCGCGcucgugcuguGGUcaugagucGGGCGCCg- -3' miRNA: 3'- aGaaGCGUGGCGCu---------CCA--------UCCGCGGau -5' |
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6640 | 3' | -58.6 | NC_001847.1 | + | 63293 | 0.66 | 0.769072 |
Target: 5'- gCUUC-CACCGCuGGGGaGGGCGUg-- -3' miRNA: 3'- aGAAGcGUGGCG-CUCCaUCCGCGgau -5' |
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6640 | 3' | -58.6 | NC_001847.1 | + | 31157 | 0.66 | 0.729567 |
Target: 5'- cCUUCGCgggcggcgucgacGCCGCGc--UGGGCGCCg- -3' miRNA: 3'- aGAAGCG-------------UGGCGCuccAUCCGCGGau -5' |
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6640 | 3' | -58.6 | NC_001847.1 | + | 93309 | 0.66 | 0.769072 |
Target: 5'- ---cCGCGCgCGCGuGuGUAGGCGCg-- -3' miRNA: 3'- agaaGCGUG-GCGCuC-CAUCCGCGgau -5' |
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6640 | 3' | -58.6 | NC_001847.1 | + | 81172 | 0.66 | 0.759601 |
Target: 5'- ---cCGCGCCGCucgGAGGgcucgcggcGGCGCCa- -3' miRNA: 3'- agaaGCGUGGCG---CUCCau-------CCGCGGau -5' |
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6640 | 3' | -58.6 | NC_001847.1 | + | 60043 | 0.66 | 0.750018 |
Target: 5'- cUCUUCGUcgGgCGCGAGGc-GGCGCg-- -3' miRNA: 3'- -AGAAGCG--UgGCGCUCCauCCGCGgau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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