Results 61 - 80 of 117 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
6640 | 3' | -58.6 | NC_001847.1 | + | 48061 | 0.68 | 0.65 |
Target: 5'- cCgcgCGCGCCGCGAaaGGcggGGGCGCa-- -3' miRNA: 3'- aGaa-GCGUGGCGCU--CCa--UCCGCGgau -5' |
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6640 | 3' | -58.6 | NC_001847.1 | + | 49939 | 0.68 | 0.609104 |
Target: 5'- cUUUUGCACCGCcGGGcugcccGGCGCCg- -3' miRNA: 3'- aGAAGCGUGGCGcUCCau----CCGCGGau -5' |
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6640 | 3' | -58.6 | NC_001847.1 | + | 50402 | 0.68 | 0.660209 |
Target: 5'- --cUCGUGCUGCGGuuGGUGcGCGCCUGc -3' miRNA: 3'- agaAGCGUGGCGCU--CCAUcCGCGGAU- -5' |
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6640 | 3' | -58.6 | NC_001847.1 | + | 21751 | 0.68 | 0.629548 |
Target: 5'- ---cCGCGCgCGCGGGGgggccgccGGCGCCg- -3' miRNA: 3'- agaaGCGUG-GCGCUCCau------CCGCGGau -5' |
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6640 | 3' | -58.6 | NC_001847.1 | + | 132663 | 0.68 | 0.65 |
Target: 5'- gUCUUCaCACgGCGGcGG-GGGCGCCg- -3' miRNA: 3'- -AGAAGcGUGgCGCU-CCaUCCGCGGau -5' |
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6640 | 3' | -58.6 | NC_001847.1 | + | 124518 | 0.68 | 0.660209 |
Target: 5'- ----gGCACCGCuAGGUAcauGGCGCCc- -3' miRNA: 3'- agaagCGUGGCGcUCCAU---CCGCGGau -5' |
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6640 | 3' | -58.6 | NC_001847.1 | + | 131969 | 0.68 | 0.65 |
Target: 5'- --gUCGCcuGCCGCGAGGcgcuggAGGCgGCCc- -3' miRNA: 3'- agaAGCG--UGGCGCUCCa-----UCCG-CGGau -5' |
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6640 | 3' | -58.6 | NC_001847.1 | + | 65864 | 0.68 | 0.65 |
Target: 5'- cCUUCuGCGCgGCGAGcugacGUGGGgGCCg- -3' miRNA: 3'- aGAAG-CGUGgCGCUC-----CAUCCgCGGau -5' |
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6640 | 3' | -58.6 | NC_001847.1 | + | 50595 | 0.68 | 0.65 |
Target: 5'- cCUggaGCGCUGCGAcGcGGGCGCCUu -3' miRNA: 3'- aGAag-CGUGGCGCUcCaUCCGCGGAu -5' |
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6640 | 3' | -58.6 | NC_001847.1 | + | 41812 | 0.68 | 0.65 |
Target: 5'- ---aCGCACCGCGcGGGcGGGCGgCg- -3' miRNA: 3'- agaaGCGUGGCGC-UCCaUCCGCgGau -5' |
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6640 | 3' | -58.6 | NC_001847.1 | + | 11913 | 0.68 | 0.65 |
Target: 5'- gUUUUCGCGcCCGCGGcuuucUAGGCGCCc- -3' miRNA: 3'- -AGAAGCGU-GGCGCUcc---AUCCGCGGau -5' |
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6640 | 3' | -58.6 | NC_001847.1 | + | 37183 | 0.68 | 0.65 |
Target: 5'- --cUCGCGCCGgGAgagcccGGUgcgAGGCGCCc- -3' miRNA: 3'- agaAGCGUGGCgCU------CCA---UCCGCGGau -5' |
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6640 | 3' | -58.6 | NC_001847.1 | + | 7846 | 0.68 | 0.65 |
Target: 5'- gUCUcCgGCACCGCc-GGU-GGCGCCUGc -3' miRNA: 3'- -AGAaG-CGUGGCGcuCCAuCCGCGGAU- -5' |
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6640 | 3' | -58.6 | NC_001847.1 | + | 34440 | 0.68 | 0.639777 |
Target: 5'- aCUUCGgGCCGCGGacgaggccgcGGUGGcCGCCg- -3' miRNA: 3'- aGAAGCgUGGCGCU----------CCAUCcGCGGau -5' |
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6640 | 3' | -58.6 | NC_001847.1 | + | 95382 | 0.68 | 0.638754 |
Target: 5'- ---cCGCGCCGCcggcucuGAGGccGGCGCCg- -3' miRNA: 3'- agaaGCGUGGCG-------CUCCauCCGCGGau -5' |
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6640 | 3' | -58.6 | NC_001847.1 | + | 124564 | 0.68 | 0.629548 |
Target: 5'- ---cCGCGCgCGCGGGGgggccgccGGCGCCg- -3' miRNA: 3'- agaaGCGUG-GCGCUCCau------CCGCGGau -5' |
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6640 | 3' | -58.6 | NC_001847.1 | + | 89698 | 0.68 | 0.629548 |
Target: 5'- aUUUgcgCGCGCCGCGAc--GGGCGCCc- -3' miRNA: 3'- -AGAa--GCGUGGCGCUccaUCCGCGGau -5' |
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6640 | 3' | -58.6 | NC_001847.1 | + | 93063 | 0.68 | 0.629548 |
Target: 5'- ----gGCACCGCGAGGccgauGCGCCg- -3' miRNA: 3'- agaagCGUGGCGCUCCauc--CGCGGau -5' |
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6640 | 3' | -58.6 | NC_001847.1 | + | 22180 | 0.68 | 0.609104 |
Target: 5'- --aUCGCGCCGCGAauGcGcGGGCGCUg- -3' miRNA: 3'- agaAGCGUGGCGCU--C-CaUCCGCGGau -5' |
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6640 | 3' | -58.6 | NC_001847.1 | + | 76628 | 0.68 | 0.608083 |
Target: 5'- cUCUUCGUgucccugcccgucGCCcugcccgaggGCGGGGaGGGCGCCUu -3' miRNA: 3'- -AGAAGCG-------------UGG----------CGCUCCaUCCGCGGAu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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