miRNA display CGI


Results 21 - 40 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6640 3' -58.6 NC_001847.1 + 1561 0.69 0.558417
Target:  5'- ---aCGCGCCGCGAGGccagcacGGCGCg-- -3'
miRNA:   3'- agaaGCGUGGCGCUCCau-----CCGCGgau -5'
6640 3' -58.6 NC_001847.1 + 31307 0.69 0.588728
Target:  5'- gCUgcggCGCGCCGCGGGc--GGCgGCCUGg -3'
miRNA:   3'- aGAa---GCGUGGCGCUCcauCCG-CGGAU- -5'
6640 3' -58.6 NC_001847.1 + 130134 0.69 0.578584
Target:  5'- --cUCGCG-CGCGAGGgcgAGGCGCa-- -3'
miRNA:   3'- agaAGCGUgGCGCUCCa--UCCGCGgau -5'
6640 3' -58.6 NC_001847.1 + 103909 0.69 0.548407
Target:  5'- ----gGCGCCGCGGccgcGGgcGGCGCCg- -3'
miRNA:   3'- agaagCGUGGCGCU----CCauCCGCGGau -5'
6640 3' -58.6 NC_001847.1 + 104374 0.69 0.558417
Target:  5'- ---aCGCGCCGCGAGGccagcacGGCGCg-- -3'
miRNA:   3'- agaaGCGUGGCGCUCCau-----CCGCGgau -5'
6640 3' -58.6 NC_001847.1 + 5240 0.69 0.568478
Target:  5'- cUCcgUGCAggucuCCGCGGGGgaggGGGCGCUUGa -3'
miRNA:   3'- -AGaaGCGU-----GGCGCUCCa---UCCGCGGAU- -5'
6640 3' -58.6 NC_001847.1 + 39827 0.69 0.568478
Target:  5'- cCUUCggcccugccgGCGCCGCGccuGG-AGGCGCCa- -3'
miRNA:   3'- aGAAG----------CGUGGCGCu--CCaUCCGCGGau -5'
6640 3' -58.6 NC_001847.1 + 134120 0.69 0.588728
Target:  5'- gCUgcggCGCGCCGCGGGc--GGCgGCCUGg -3'
miRNA:   3'- aGAa---GCGUGGCGCUCcauCCG-CGGAU- -5'
6640 3' -58.6 NC_001847.1 + 66318 0.69 0.598904
Target:  5'- cUCUUCGCGgCGCccugcggcggguGGGGcgcGGGCGCCg- -3'
miRNA:   3'- -AGAAGCGUgGCG------------CUCCa--UCCGCGGau -5'
6640 3' -58.6 NC_001847.1 + 1096 0.69 0.548407
Target:  5'- ----gGCGCCGCGGccgcGGgcGGCGCCg- -3'
miRNA:   3'- agaagCGUGGCGCU----CCauCCGCGGau -5'
6640 3' -58.6 NC_001847.1 + 51509 0.69 0.548407
Target:  5'- ----aGCGCCGCGccGGUGcGGCGCCg- -3'
miRNA:   3'- agaagCGUGGCGCu-CCAU-CCGCGGau -5'
6640 3' -58.6 NC_001847.1 + 20189 0.69 0.578584
Target:  5'- --gUCGUagACCGCGGGGc-GGCGCCc- -3'
miRNA:   3'- agaAGCG--UGGCGCUCCauCCGCGGau -5'
6640 3' -58.6 NC_001847.1 + 83738 0.69 0.578584
Target:  5'- gUCUgCGcCGCCGCaAGGUucGGCGCCg- -3'
miRNA:   3'- -AGAaGC-GUGGCGcUCCAu-CCGCGGau -5'
6640 3' -58.6 NC_001847.1 + 65864 0.68 0.65
Target:  5'- cCUUCuGCGCgGCGAGcugacGUGGGgGCCg- -3'
miRNA:   3'- aGAAG-CGUGgCGCUC-----CAUCCgCGGau -5'
6640 3' -58.6 NC_001847.1 + 50595 0.68 0.65
Target:  5'- cCUggaGCGCUGCGAcGcGGGCGCCUu -3'
miRNA:   3'- aGAag-CGUGGCGCUcCaUCCGCGGAu -5'
6640 3' -58.6 NC_001847.1 + 41812 0.68 0.65
Target:  5'- ---aCGCACCGCGcGGGcGGGCGgCg- -3'
miRNA:   3'- agaaGCGUGGCGC-UCCaUCCGCgGau -5'
6640 3' -58.6 NC_001847.1 + 11913 0.68 0.65
Target:  5'- gUUUUCGCGcCCGCGGcuuucUAGGCGCCc- -3'
miRNA:   3'- -AGAAGCGU-GGCGCUcc---AUCCGCGGau -5'
6640 3' -58.6 NC_001847.1 + 37183 0.68 0.65
Target:  5'- --cUCGCGCCGgGAgagcccGGUgcgAGGCGCCc- -3'
miRNA:   3'- agaAGCGUGGCgCU------CCA---UCCGCGGau -5'
6640 3' -58.6 NC_001847.1 + 7846 0.68 0.65
Target:  5'- gUCUcCgGCACCGCc-GGU-GGCGCCUGc -3'
miRNA:   3'- -AGAaG-CGUGGCGcuCCAuCCGCGGAU- -5'
6640 3' -58.6 NC_001847.1 + 131969 0.68 0.65
Target:  5'- --gUCGCcuGCCGCGAGGcgcuggAGGCgGCCc- -3'
miRNA:   3'- agaAGCG--UGGCGCUCCa-----UCCG-CGGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.