miRNA display CGI


Results 41 - 60 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6640 3' -58.6 NC_001847.1 + 49939 0.68 0.609104
Target:  5'- cUUUUGCACCGCcGGGcugcccGGCGCCg- -3'
miRNA:   3'- aGAAGCGUGGCGcUCCau----CCGCGGau -5'
6640 3' -58.6 NC_001847.1 + 21751 0.68 0.629548
Target:  5'- ---cCGCGCgCGCGGGGgggccgccGGCGCCg- -3'
miRNA:   3'- agaaGCGUG-GCGCUCCau------CCGCGGau -5'
6640 3' -58.6 NC_001847.1 + 101101 0.68 0.639777
Target:  5'- aCgcgCGCGCCGCGGGGcccauCGCCUGg -3'
miRNA:   3'- aGaa-GCGUGGCGCUCCaucc-GCGGAU- -5'
6640 3' -58.6 NC_001847.1 + 95382 0.68 0.638754
Target:  5'- ---cCGCGCCGCcggcucuGAGGccGGCGCCg- -3'
miRNA:   3'- agaaGCGUGGCG-------CUCCauCCGCGGau -5'
6640 3' -58.6 NC_001847.1 + 34440 0.68 0.639777
Target:  5'- aCUUCGgGCCGCGGacgaggccgcGGUGGcCGCCg- -3'
miRNA:   3'- aGAAGCgUGGCGCU----------CCAUCcGCGGau -5'
6640 3' -58.6 NC_001847.1 + 50595 0.68 0.65
Target:  5'- cCUggaGCGCUGCGAcGcGGGCGCCUu -3'
miRNA:   3'- aGAag-CGUGGCGCUcCaUCCGCGGAu -5'
6640 3' -58.6 NC_001847.1 + 65864 0.68 0.65
Target:  5'- cCUUCuGCGCgGCGAGcugacGUGGGgGCCg- -3'
miRNA:   3'- aGAAG-CGUGgCGCUC-----CAUCCgCGGau -5'
6640 3' -58.6 NC_001847.1 + 11913 0.68 0.65
Target:  5'- gUUUUCGCGcCCGCGGcuuucUAGGCGCCc- -3'
miRNA:   3'- -AGAAGCGU-GGCGCUcc---AUCCGCGGau -5'
6640 3' -58.6 NC_001847.1 + 91772 0.68 0.659188
Target:  5'- --aUCGCAgcgagcuCCGCGAGGUacgucuccAGGCGCg-- -3'
miRNA:   3'- agaAGCGU-------GGCGCUCCA--------UCCGCGgau -5'
6640 3' -58.6 NC_001847.1 + 56228 0.68 0.65
Target:  5'- gCUUCGUccauCUGCacGAGGUagAGGCGCCg- -3'
miRNA:   3'- aGAAGCGu---GGCG--CUCCA--UCCGCGGau -5'
6640 3' -58.6 NC_001847.1 + 132663 0.68 0.65
Target:  5'- gUCUUCaCACgGCGGcGG-GGGCGCCg- -3'
miRNA:   3'- -AGAAGcGUGgCGCU-CCaUCCGCGGau -5'
6640 3' -58.6 NC_001847.1 + 29156 0.68 0.65
Target:  5'- --gUCGCcuGCCGCGAGGcgcuggAGGCgGCCc- -3'
miRNA:   3'- agaAGCG--UGGCGCUCCa-----UCCG-CGGau -5'
6640 3' -58.6 NC_001847.1 + 124518 0.68 0.660209
Target:  5'- ----gGCACCGCuAGGUAcauGGCGCCc- -3'
miRNA:   3'- agaagCGUGGCGcUCCAU---CCGCGGau -5'
6640 3' -58.6 NC_001847.1 + 50402 0.68 0.660209
Target:  5'- --cUCGUGCUGCGGuuGGUGcGCGCCUGc -3'
miRNA:   3'- agaAGCGUGGCGCU--CCAUcCGCGGAU- -5'
6640 3' -58.6 NC_001847.1 + 37183 0.68 0.65
Target:  5'- --cUCGCGCCGgGAgagcccGGUgcgAGGCGCCc- -3'
miRNA:   3'- agaAGCGUGGCgCU------CCA---UCCGCGGau -5'
6640 3' -58.6 NC_001847.1 + 7846 0.68 0.65
Target:  5'- gUCUcCgGCACCGCc-GGU-GGCGCCUGc -3'
miRNA:   3'- -AGAaG-CGUGGCGcuCCAuCCGCGGAU- -5'
6640 3' -58.6 NC_001847.1 + 48061 0.68 0.65
Target:  5'- cCgcgCGCGCCGCGAaaGGcggGGGCGCa-- -3'
miRNA:   3'- aGaa-GCGUGGCGCU--CCa--UCCGCGgau -5'
6640 3' -58.6 NC_001847.1 + 90093 0.67 0.670395
Target:  5'- cUCUgggaCGcCACCGCGGGG--GGCGCUg- -3'
miRNA:   3'- -AGAa---GC-GUGGCGCUCCauCCGCGGau -5'
6640 3' -58.6 NC_001847.1 + 12085 0.67 0.700732
Target:  5'- ----aGCGCCGCG-GGUccGGCGCCc- -3'
miRNA:   3'- agaagCGUGGCGCuCCAu-CCGCGGau -5'
6640 3' -58.6 NC_001847.1 + 51549 0.67 0.720683
Target:  5'- gCUgcgCGCGCgCGCGugcucGGGcucgcGGGCGCCUAc -3'
miRNA:   3'- aGAa--GCGUG-GCGC-----UCCa----UCCGCGGAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.