miRNA display CGI


Results 1 - 20 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6640 3' -58.6 NC_001847.1 + 94762 0.95 0.01289
Target:  5'- cUCUUCGCACCGCGAGGUGaGCGCCUAc -3'
miRNA:   3'- -AGAAGCGUGGCGCUCCAUcCGCGGAU- -5'
6640 3' -58.6 NC_001847.1 + 86298 0.75 0.265716
Target:  5'- --cUCGCGCCGCGcGGccgAGGCGCCc- -3'
miRNA:   3'- agaAGCGUGGCGCuCCa--UCCGCGGau -5'
6640 3' -58.6 NC_001847.1 + 13857 0.74 0.30576
Target:  5'- uUCUUCGCugauggUgGCGAGGggGGGCGCCUu -3'
miRNA:   3'- -AGAAGCGu-----GgCGCUCCa-UCCGCGGAu -5'
6640 3' -58.6 NC_001847.1 + 89990 0.74 0.323026
Target:  5'- gCUgCGCGCCGCGGGGcugcaccccgcagaAGGCGCCg- -3'
miRNA:   3'- aGAaGCGUGGCGCUCCa-------------UCCGCGGau -5'
6640 3' -58.6 NC_001847.1 + 101375 0.74 0.334935
Target:  5'- --cUUGCGCCGCGGGGgcugcccgcGGCGCCg- -3'
miRNA:   3'- agaAGCGUGGCGCUCCau-------CCGCGGau -5'
6640 3' -58.6 NC_001847.1 + 123290 0.74 0.334935
Target:  5'- --cUCGCGCCGCccgcAGGgcGGCGCCa- -3'
miRNA:   3'- agaAGCGUGGCGc---UCCauCCGCGGau -5'
6640 3' -58.6 NC_001847.1 + 44595 0.73 0.350269
Target:  5'- cCUcgCGCGCgGCGAGGgccgccaGGGCGCCg- -3'
miRNA:   3'- aGAa-GCGUGgCGCUCCa------UCCGCGGau -5'
6640 3' -58.6 NC_001847.1 + 35838 0.73 0.358121
Target:  5'- aUCgacgCGCugCGCGAGcugAGGCGCCa- -3'
miRNA:   3'- -AGaa--GCGugGCGCUCca-UCCGCGGau -5'
6640 3' -58.6 NC_001847.1 + 3940 0.73 0.382407
Target:  5'- --cUgGCGCCGCGGcGGgggGGGCGCCg- -3'
miRNA:   3'- agaAgCGUGGCGCU-CCa--UCCGCGGau -5'
6640 3' -58.6 NC_001847.1 + 55134 0.73 0.382407
Target:  5'- gCUUCGCAuCCGCGcGGgcgcgGGGCGUCa- -3'
miRNA:   3'- aGAAGCGU-GGCGCuCCa----UCCGCGGau -5'
6640 3' -58.6 NC_001847.1 + 106753 0.73 0.382407
Target:  5'- --cUgGCGCCGCGGcGGgggGGGCGCCg- -3'
miRNA:   3'- agaAgCGUGGCGCU-CCa--UCCGCGGau -5'
6640 3' -58.6 NC_001847.1 + 11827 0.72 0.390743
Target:  5'- aCagCGCGCgGgGGGGgGGGCGCCUAg -3'
miRNA:   3'- aGaaGCGUGgCgCUCCaUCCGCGGAU- -5'
6640 3' -58.6 NC_001847.1 + 78322 0.72 0.43415
Target:  5'- gCgcgCGCGCCGCGGGcccggcuUGGGCGCCg- -3'
miRNA:   3'- aGaa-GCGUGGCGCUCc------AUCCGCGGau -5'
6640 3' -58.6 NC_001847.1 + 42875 0.71 0.443163
Target:  5'- ---gCGCACCGCGccacgcuaGUGGGCGCCUu -3'
miRNA:   3'- agaaGCGUGGCGCuc------CAUCCGCGGAu -5'
6640 3' -58.6 NC_001847.1 + 17798 0.71 0.452281
Target:  5'- gCUUUGCucgGCCGCGGGGggcgAGGcCGCCc- -3'
miRNA:   3'- aGAAGCG---UGGCGCUCCa---UCC-GCGGau -5'
6640 3' -58.6 NC_001847.1 + 70266 0.71 0.470816
Target:  5'- cUCgcUGUACCGCGAGGacgcGCGCCUGg -3'
miRNA:   3'- -AGaaGCGUGGCGCUCCauc-CGCGGAU- -5'
6640 3' -58.6 NC_001847.1 + 34159 0.71 0.480227
Target:  5'- ---gCGCugCGCGAGGcggcugAGGCGCUg- -3'
miRNA:   3'- agaaGCGugGCGCUCCa-----UCCGCGGau -5'
6640 3' -58.6 NC_001847.1 + 88539 0.7 0.48973
Target:  5'- gCUcgUGCGCCGCGAGGcc-GCGCCg- -3'
miRNA:   3'- aGAa-GCGUGGCGCUCCaucCGCGGau -5'
6640 3' -58.6 NC_001847.1 + 33226 0.7 0.508991
Target:  5'- gCUUgGCGCCGCGccGGGcgccgcGGCGCCUc -3'
miRNA:   3'- aGAAgCGUGGCGC--UCCau----CCGCGGAu -5'
6640 3' -58.6 NC_001847.1 + 75394 0.69 0.547409
Target:  5'- cUCgcgUCGcCGCCGCGAGGcGGGCaucgcggGCCa- -3'
miRNA:   3'- -AGa--AGC-GUGGCGCUCCaUCCG-------CGGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.