miRNA display CGI


Results 21 - 40 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6640 3' -58.6 NC_001847.1 + 22417 0.66 0.750018
Target:  5'- --cUCGU-CCGCGGGGgcGGgGCCc- -3'
miRNA:   3'- agaAGCGuGGCGCUCCauCCgCGGau -5'
6640 3' -58.6 NC_001847.1 + 4963 0.66 0.750018
Target:  5'- aUCgcgCGCGCCGgGGGGgcagcugGGGUGCg-- -3'
miRNA:   3'- -AGaa-GCGUGGCgCUCCa------UCCGCGgau -5'
6640 3' -58.6 NC_001847.1 + 60043 0.66 0.750018
Target:  5'- cUCUUCGUcgGgCGCGAGGc-GGCGCg-- -3'
miRNA:   3'- -AGAAGCG--UgGCGCUCCauCCGCGgau -5'
6640 3' -58.6 NC_001847.1 + 125230 0.66 0.750018
Target:  5'- --cUCGU-CCGCGGGGgcGGgGCCc- -3'
miRNA:   3'- agaAGCGuGGCGCUCCauCCgCGGau -5'
6640 3' -58.6 NC_001847.1 + 40152 0.66 0.740331
Target:  5'- aCUUCGCAgUGCGGuGacUGGGCGuCCUGg -3'
miRNA:   3'- aGAAGCGUgGCGCUcC--AUCCGC-GGAU- -5'
6640 3' -58.6 NC_001847.1 + 35564 0.66 0.740331
Target:  5'- ---gCGCgACCGCGAcGaGGGCGCCg- -3'
miRNA:   3'- agaaGCG-UGGCGCUcCaUCCGCGGau -5'
6640 3' -58.6 NC_001847.1 + 16786 0.66 0.740331
Target:  5'- ---cCGCACgGCGGGGUcaucGGGCagGCCa- -3'
miRNA:   3'- agaaGCGUGgCGCUCCA----UCCG--CGGau -5'
6640 3' -58.6 NC_001847.1 + 85250 0.66 0.740331
Target:  5'- ----gGCGCCaggugcGCGAGGUAGGUgGCCg- -3'
miRNA:   3'- agaagCGUGG------CGCUCCAUCCG-CGGau -5'
6640 3' -58.6 NC_001847.1 + 34106 0.66 0.740331
Target:  5'- --cUCGCGCgGCGGcGGagccugcGGCGCCUGc -3'
miRNA:   3'- agaAGCGUGgCGCU-CCau-----CCGCGGAU- -5'
6640 3' -58.6 NC_001847.1 + 115977 0.66 0.73055
Target:  5'- ---gUGCugCGCGGGGUaacaacGGGCGCg-- -3'
miRNA:   3'- agaaGCGugGCGCUCCA------UCCGCGgau -5'
6640 3' -58.6 NC_001847.1 + 69654 0.66 0.73055
Target:  5'- ---cCGCGCCGCGAcccgguacgcguGGUAGGCaGCg-- -3'
miRNA:   3'- agaaGCGUGGCGCU------------CCAUCCG-CGgau -5'
6640 3' -58.6 NC_001847.1 + 82667 0.66 0.73055
Target:  5'- gCggCGCGCCGCGcucgugcuguGGUcaugagucGGGCGCCg- -3'
miRNA:   3'- aGaaGCGUGGCGCu---------CCA--------UCCGCGGau -5'
6640 3' -58.6 NC_001847.1 + 13934 0.66 0.73055
Target:  5'- ---cCGCGCCGCGgcAGGgGGGcCGCCc- -3'
miRNA:   3'- agaaGCGUGGCGC--UCCaUCC-GCGGau -5'
6640 3' -58.6 NC_001847.1 + 3693 0.66 0.73055
Target:  5'- cCUgcgCGCACCaC-AGGUAGGCGCg-- -3'
miRNA:   3'- aGAa--GCGUGGcGcUCCAUCCGCGgau -5'
6640 3' -58.6 NC_001847.1 + 130931 0.66 0.73055
Target:  5'- ----gGCACCGCGcAGGgcuuuGGCuGCCUGc -3'
miRNA:   3'- agaagCGUGGCGC-UCCau---CCG-CGGAU- -5'
6640 3' -58.6 NC_001847.1 + 31157 0.66 0.729567
Target:  5'- cCUUCGCgggcggcgucgacGCCGCGc--UGGGCGCCg- -3'
miRNA:   3'- aGAAGCG-------------UGGCGCuccAUCCGCGGau -5'
6640 3' -58.6 NC_001847.1 + 51549 0.67 0.720683
Target:  5'- gCUgcgCGCGCgCGCGugcucGGGcucgcGGGCGCCUAc -3'
miRNA:   3'- aGAa--GCGUG-GCGC-----UCCa----UCCGCGGAU- -5'
6640 3' -58.6 NC_001847.1 + 43535 0.67 0.720683
Target:  5'- ---cCGCAgCCGCGAGG-AGaaGCGCCg- -3'
miRNA:   3'- agaaGCGU-GGCGCUCCaUC--CGCGGau -5'
6640 3' -58.6 NC_001847.1 + 101885 0.67 0.710741
Target:  5'- cCUUUGCgcgcggACCGCGGcagcGG-AGGCGCCg- -3'
miRNA:   3'- aGAAGCG------UGGCGCU----CCaUCCGCGGau -5'
6640 3' -58.6 NC_001847.1 + 117720 0.67 0.710741
Target:  5'- aCUUgGCGCCGCGAcaUGGGCaCCa- -3'
miRNA:   3'- aGAAgCGUGGCGCUccAUCCGcGGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.