miRNA display CGI


Results 41 - 60 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6640 3' -58.6 NC_001847.1 + 101885 0.67 0.710741
Target:  5'- cCUUUGCgcgcggACCGCGGcagcGG-AGGCGCCg- -3'
miRNA:   3'- aGAAGCG------UGGCGCU----CCaUCCGCGGau -5'
6640 3' -58.6 NC_001847.1 + 99286 0.67 0.710741
Target:  5'- ---cCGCAgCGCgucGAGGU-GGCGCCUc -3'
miRNA:   3'- agaaGCGUgGCG---CUCCAuCCGCGGAu -5'
6640 3' -58.6 NC_001847.1 + 101456 0.67 0.700732
Target:  5'- ---cCGCGCCGCGAGcGccuGCGCCUc -3'
miRNA:   3'- agaaGCGUGGCGCUC-CaucCGCGGAu -5'
6640 3' -58.6 NC_001847.1 + 12085 0.67 0.700732
Target:  5'- ----aGCGCCGCG-GGUccGGCGCCc- -3'
miRNA:   3'- agaagCGUGGCGCuCCAu-CCGCGGau -5'
6640 3' -58.6 NC_001847.1 + 62459 0.67 0.699728
Target:  5'- gCUcUGCGCCGCGuGGUgugccacAGGCuGCCg- -3'
miRNA:   3'- aGAaGCGUGGCGCuCCA-------UCCG-CGGau -5'
6640 3' -58.6 NC_001847.1 + 33334 0.67 0.690665
Target:  5'- gCggCGCGCUGCGugacGGUGGGCcCCUc -3'
miRNA:   3'- aGaaGCGUGGCGCu---CCAUCCGcGGAu -5'
6640 3' -58.6 NC_001847.1 + 43564 0.67 0.690665
Target:  5'- ----aGCGCCGCGAGGauggccgAGGCGUa-- -3'
miRNA:   3'- agaagCGUGGCGCUCCa------UCCGCGgau -5'
6640 3' -58.6 NC_001847.1 + 70752 0.67 0.690665
Target:  5'- ----aGCGCCGCGcAGaGcGGGCGCCg- -3'
miRNA:   3'- agaagCGUGGCGC-UC-CaUCCGCGGau -5'
6640 3' -58.6 NC_001847.1 + 61198 0.67 0.690665
Target:  5'- gUUUUGCGCgCGCGccAGGUAcGCGCCg- -3'
miRNA:   3'- aGAAGCGUG-GCGC--UCCAUcCGCGGau -5'
6640 3' -58.6 NC_001847.1 + 52299 0.67 0.690665
Target:  5'- ---gCGCgACCGCGGgcgcGGgcGGCGCCa- -3'
miRNA:   3'- agaaGCG-UGGCGCU----CCauCCGCGGau -5'
6640 3' -58.6 NC_001847.1 + 62486 0.67 0.68055
Target:  5'- --gUCGCcggcgggcgGCCGCGGGGU-GGCgGCCa- -3'
miRNA:   3'- agaAGCG---------UGGCGCUCCAuCCG-CGGau -5'
6640 3' -58.6 NC_001847.1 + 18716 0.67 0.68055
Target:  5'- ----aGCGCCGCGGGGa--GCGCCa- -3'
miRNA:   3'- agaagCGUGGCGCUCCaucCGCGGau -5'
6640 3' -58.6 NC_001847.1 + 15921 0.67 0.68055
Target:  5'- cUCgUCGU-CCGUGGGGUAGGCgaaGCCc- -3'
miRNA:   3'- -AGaAGCGuGGCGCUCCAUCCG---CGGau -5'
6640 3' -58.6 NC_001847.1 + 6358 0.67 0.68055
Target:  5'- ---cCGCGCCGCGGGcGUAGcCGCUg- -3'
miRNA:   3'- agaaGCGUGGCGCUC-CAUCcGCGGau -5'
6640 3' -58.6 NC_001847.1 + 66285 0.67 0.68055
Target:  5'- ----gGCGgCGCGA-GUAGGCGCCg- -3'
miRNA:   3'- agaagCGUgGCGCUcCAUCCGCGGau -5'
6640 3' -58.6 NC_001847.1 + 71164 0.67 0.68055
Target:  5'- aCUUgaGCGCCGCGAacagGGUGucgcgcagcgccGGCGCCg- -3'
miRNA:   3'- aGAAg-CGUGGCGCU----CCAU------------CCGCGGau -5'
6640 3' -58.6 NC_001847.1 + 114937 0.67 0.670395
Target:  5'- --cUCGCGuuUgGCGGGGcgGGGCGCCg- -3'
miRNA:   3'- agaAGCGU--GgCGCUCCa-UCCGCGGau -5'
6640 3' -58.6 NC_001847.1 + 105696 0.67 0.670395
Target:  5'- gCUUCG-GCCGCGGGc--GGCGCCa- -3'
miRNA:   3'- aGAAGCgUGGCGCUCcauCCGCGGau -5'
6640 3' -58.6 NC_001847.1 + 90093 0.67 0.670395
Target:  5'- cUCUgggaCGcCACCGCGGGG--GGCGCUg- -3'
miRNA:   3'- -AGAa---GC-GUGGCGCUCCauCCGCGGau -5'
6640 3' -58.6 NC_001847.1 + 93280 0.67 0.670395
Target:  5'- --aUCGCGCCGCGAuGUcGGCGgCg- -3'
miRNA:   3'- agaAGCGUGGCGCUcCAuCCGCgGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.