miRNA display CGI


Results 1 - 20 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6640 3' -58.6 NC_001847.1 + 1096 0.69 0.548407
Target:  5'- ----gGCGCCGCGGccgcGGgcGGCGCCg- -3'
miRNA:   3'- agaagCGUGGCGCU----CCauCCGCGGau -5'
6640 3' -58.6 NC_001847.1 + 1561 0.69 0.558417
Target:  5'- ---aCGCGCCGCGAGGccagcacGGCGCg-- -3'
miRNA:   3'- agaaGCGUGGCGCUCCau-----CCGCGgau -5'
6640 3' -58.6 NC_001847.1 + 3693 0.66 0.73055
Target:  5'- cCUgcgCGCACCaC-AGGUAGGCGCg-- -3'
miRNA:   3'- aGAa--GCGUGGcGcUCCAUCCGCGgau -5'
6640 3' -58.6 NC_001847.1 + 3844 0.66 0.769072
Target:  5'- -gUUCGCGCCGCcccaGAcGUAgacGGCGCCg- -3'
miRNA:   3'- agAAGCGUGGCG----CUcCAU---CCGCGGau -5'
6640 3' -58.6 NC_001847.1 + 3940 0.73 0.382407
Target:  5'- --cUgGCGCCGCGGcGGgggGGGCGCCg- -3'
miRNA:   3'- agaAgCGUGGCGCU-CCa--UCCGCGGau -5'
6640 3' -58.6 NC_001847.1 + 3965 0.66 0.778421
Target:  5'- ----aGCGCCagcGCGAGGUGGGCcgugagcacGCCa- -3'
miRNA:   3'- agaagCGUGG---CGCUCCAUCCG---------CGGau -5'
6640 3' -58.6 NC_001847.1 + 4963 0.66 0.750018
Target:  5'- aUCgcgCGCGCCGgGGGGgcagcugGGGUGCg-- -3'
miRNA:   3'- -AGaa-GCGUGGCgCUCCa------UCCGCGgau -5'
6640 3' -58.6 NC_001847.1 + 5240 0.69 0.568478
Target:  5'- cUCcgUGCAggucuCCGCGGGGgaggGGGCGCUUGa -3'
miRNA:   3'- -AGaaGCGU-----GGCGCUCCa---UCCGCGGAU- -5'
6640 3' -58.6 NC_001847.1 + 6358 0.67 0.68055
Target:  5'- ---cCGCGCCGCGGGcGUAGcCGCUg- -3'
miRNA:   3'- agaaGCGUGGCGCUC-CAUCcGCGGau -5'
6640 3' -58.6 NC_001847.1 + 7846 0.68 0.65
Target:  5'- gUCUcCgGCACCGCc-GGU-GGCGCCUGc -3'
miRNA:   3'- -AGAaG-CGUGGCGcuCCAuCCGCGGAU- -5'
6640 3' -58.6 NC_001847.1 + 11827 0.72 0.390743
Target:  5'- aCagCGCGCgGgGGGGgGGGCGCCUAg -3'
miRNA:   3'- aGaaGCGUGgCgCUCCaUCCGCGGAU- -5'
6640 3' -58.6 NC_001847.1 + 11913 0.68 0.65
Target:  5'- gUUUUCGCGcCCGCGGcuuucUAGGCGCCc- -3'
miRNA:   3'- -AGAAGCGU-GGCGCUcc---AUCCGCGGau -5'
6640 3' -58.6 NC_001847.1 + 12085 0.67 0.700732
Target:  5'- ----aGCGCCGCG-GGUccGGCGCCc- -3'
miRNA:   3'- agaagCGUGGCGCuCCAu-CCGCGGau -5'
6640 3' -58.6 NC_001847.1 + 13857 0.74 0.30576
Target:  5'- uUCUUCGCugauggUgGCGAGGggGGGCGCCUu -3'
miRNA:   3'- -AGAAGCGu-----GgCGCUCCa-UCCGCGGAu -5'
6640 3' -58.6 NC_001847.1 + 13934 0.66 0.73055
Target:  5'- ---cCGCGCCGCGgcAGGgGGGcCGCCc- -3'
miRNA:   3'- agaaGCGUGGCGC--UCCaUCC-GCGGau -5'
6640 3' -58.6 NC_001847.1 + 15921 0.67 0.68055
Target:  5'- cUCgUCGU-CCGUGGGGUAGGCgaaGCCc- -3'
miRNA:   3'- -AGaAGCGuGGCGCUCCAUCCG---CGGau -5'
6640 3' -58.6 NC_001847.1 + 16786 0.66 0.740331
Target:  5'- ---cCGCACgGCGGGGUcaucGGGCagGCCa- -3'
miRNA:   3'- agaaGCGUGgCGCUCCA----UCCG--CGGau -5'
6640 3' -58.6 NC_001847.1 + 17798 0.71 0.452281
Target:  5'- gCUUUGCucgGCCGCGGGGggcgAGGcCGCCc- -3'
miRNA:   3'- aGAAGCG---UGGCGCUCCa---UCC-GCGGau -5'
6640 3' -58.6 NC_001847.1 + 18716 0.67 0.68055
Target:  5'- ----aGCGCCGCGGGGa--GCGCCa- -3'
miRNA:   3'- agaagCGUGGCGCUCCaucCGCGGau -5'
6640 3' -58.6 NC_001847.1 + 19186 0.66 0.778421
Target:  5'- ----aGCACgGCGGGGgcGGgGUCUGu -3'
miRNA:   3'- agaagCGUGgCGCUCCauCCgCGGAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.