miRNA display CGI


Results 21 - 40 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6640 3' -58.6 NC_001847.1 + 20189 0.69 0.578584
Target:  5'- --gUCGUagACCGCGGGGc-GGCGCCc- -3'
miRNA:   3'- agaAGCG--UGGCGCUCCauCCGCGGau -5'
6640 3' -58.6 NC_001847.1 + 20258 0.66 0.778421
Target:  5'- ---cCGCgagagcgagACgGCGAGGUcGGCGCCg- -3'
miRNA:   3'- agaaGCG---------UGgCGCUCCAuCCGCGGau -5'
6640 3' -58.6 NC_001847.1 + 21751 0.68 0.629548
Target:  5'- ---cCGCGCgCGCGGGGgggccgccGGCGCCg- -3'
miRNA:   3'- agaaGCGUG-GCGCUCCau------CCGCGGau -5'
6640 3' -58.6 NC_001847.1 + 22180 0.68 0.609104
Target:  5'- --aUCGCGCCGCGAauGcGcGGGCGCUg- -3'
miRNA:   3'- agaAGCGUGGCGCU--C-CaUCCGCGGau -5'
6640 3' -58.6 NC_001847.1 + 22417 0.66 0.750018
Target:  5'- --cUCGU-CCGCGGGGgcGGgGCCc- -3'
miRNA:   3'- agaAGCGuGGCGCUCCauCCgCGGau -5'
6640 3' -58.6 NC_001847.1 + 29156 0.68 0.65
Target:  5'- --gUCGCcuGCCGCGAGGcgcuggAGGCgGCCc- -3'
miRNA:   3'- agaAGCG--UGGCGCUCCa-----UCCG-CGGau -5'
6640 3' -58.6 NC_001847.1 + 31157 0.66 0.729567
Target:  5'- cCUUCGCgggcggcgucgacGCCGCGc--UGGGCGCCg- -3'
miRNA:   3'- aGAAGCG-------------UGGCGCuccAUCCGCGGau -5'
6640 3' -58.6 NC_001847.1 + 31307 0.69 0.588728
Target:  5'- gCUgcggCGCGCCGCGGGc--GGCgGCCUGg -3'
miRNA:   3'- aGAa---GCGUGGCGCUCcauCCG-CGGAU- -5'
6640 3' -58.6 NC_001847.1 + 33226 0.7 0.508991
Target:  5'- gCUUgGCGCCGCGccGGGcgccgcGGCGCCUc -3'
miRNA:   3'- aGAAgCGUGGCGC--UCCau----CCGCGGAu -5'
6640 3' -58.6 NC_001847.1 + 33334 0.67 0.690665
Target:  5'- gCggCGCGCUGCGugacGGUGGGCcCCUc -3'
miRNA:   3'- aGaaGCGUGGCGCu---CCAUCCGcGGAu -5'
6640 3' -58.6 NC_001847.1 + 34106 0.66 0.740331
Target:  5'- --cUCGCGCgGCGGcGGagccugcGGCGCCUGc -3'
miRNA:   3'- agaAGCGUGgCGCU-CCau-----CCGCGGAU- -5'
6640 3' -58.6 NC_001847.1 + 34159 0.71 0.480227
Target:  5'- ---gCGCugCGCGAGGcggcugAGGCGCUg- -3'
miRNA:   3'- agaaGCGugGCGCUCCa-----UCCGCGGau -5'
6640 3' -58.6 NC_001847.1 + 34440 0.68 0.639777
Target:  5'- aCUUCGgGCCGCGGacgaggccgcGGUGGcCGCCg- -3'
miRNA:   3'- aGAAGCgUGGCGCU----------CCAUCcGCGGau -5'
6640 3' -58.6 NC_001847.1 + 35564 0.66 0.740331
Target:  5'- ---gCGCgACCGCGAcGaGGGCGCCg- -3'
miRNA:   3'- agaaGCG-UGGCGCUcCaUCCGCGGau -5'
6640 3' -58.6 NC_001847.1 + 35838 0.73 0.358121
Target:  5'- aUCgacgCGCugCGCGAGcugAGGCGCCa- -3'
miRNA:   3'- -AGaa--GCGugGCGCUCca-UCCGCGGau -5'
6640 3' -58.6 NC_001847.1 + 37183 0.68 0.65
Target:  5'- --cUCGCGCCGgGAgagcccGGUgcgAGGCGCCc- -3'
miRNA:   3'- agaAGCGUGGCgCU------CCA---UCCGCGGau -5'
6640 3' -58.6 NC_001847.1 + 39827 0.69 0.568478
Target:  5'- cCUUCggcccugccgGCGCCGCGccuGG-AGGCGCCa- -3'
miRNA:   3'- aGAAG----------CGUGGCGCu--CCaUCCGCGGau -5'
6640 3' -58.6 NC_001847.1 + 40152 0.66 0.740331
Target:  5'- aCUUCGCAgUGCGGuGacUGGGCGuCCUGg -3'
miRNA:   3'- aGAAGCGUgGCGCUcC--AUCCGC-GGAU- -5'
6640 3' -58.6 NC_001847.1 + 41812 0.68 0.65
Target:  5'- ---aCGCACCGCGcGGGcGGGCGgCg- -3'
miRNA:   3'- agaaGCGUGGCGC-UCCaUCCGCgGau -5'
6640 3' -58.6 NC_001847.1 + 41989 0.66 0.750018
Target:  5'- --gUCGCGgccgccuuucCCGCGGGG--GGCGCCg- -3'
miRNA:   3'- agaAGCGU----------GGCGCUCCauCCGCGGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.