miRNA display CGI


Results 1 - 20 of 117 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6640 3' -58.6 NC_001847.1 + 134120 0.69 0.588728
Target:  5'- gCUgcggCGCGCCGCGGGc--GGCgGCCUGg -3'
miRNA:   3'- aGAa---GCGUGGCGCUCcauCCG-CGGAU- -5'
6640 3' -58.6 NC_001847.1 + 132663 0.68 0.65
Target:  5'- gUCUUCaCACgGCGGcGG-GGGCGCCg- -3'
miRNA:   3'- -AGAAGcGUGgCGCU-CCaUCCGCGGau -5'
6640 3' -58.6 NC_001847.1 + 131969 0.68 0.65
Target:  5'- --gUCGCcuGCCGCGAGGcgcuggAGGCgGCCc- -3'
miRNA:   3'- agaAGCG--UGGCGCUCCa-----UCCG-CGGau -5'
6640 3' -58.6 NC_001847.1 + 130931 0.66 0.73055
Target:  5'- ----gGCACCGCGcAGGgcuuuGGCuGCCUGc -3'
miRNA:   3'- agaagCGUGGCGC-UCCau---CCG-CGGAU- -5'
6640 3' -58.6 NC_001847.1 + 130134 0.69 0.578584
Target:  5'- --cUCGCG-CGCGAGGgcgAGGCGCa-- -3'
miRNA:   3'- agaAGCGUgGCGCUCCa--UCCGCGgau -5'
6640 3' -58.6 NC_001847.1 + 125230 0.66 0.750018
Target:  5'- --cUCGU-CCGCGGGGgcGGgGCCc- -3'
miRNA:   3'- agaAGCGuGGCGCUCCauCCgCGGau -5'
6640 3' -58.6 NC_001847.1 + 124564 0.68 0.629548
Target:  5'- ---cCGCGCgCGCGGGGgggccgccGGCGCCg- -3'
miRNA:   3'- agaaGCGUG-GCGCUCCau------CCGCGGau -5'
6640 3' -58.6 NC_001847.1 + 124518 0.68 0.660209
Target:  5'- ----gGCACCGCuAGGUAcauGGCGCCc- -3'
miRNA:   3'- agaagCGUGGCGcUCCAU---CCGCGGau -5'
6640 3' -58.6 NC_001847.1 + 123290 0.74 0.334935
Target:  5'- --cUCGCGCCGCccgcAGGgcGGCGCCa- -3'
miRNA:   3'- agaAGCGUGGCGc---UCCauCCGCGGau -5'
6640 3' -58.6 NC_001847.1 + 117720 0.67 0.710741
Target:  5'- aCUUgGCGCCGCGAcaUGGGCaCCa- -3'
miRNA:   3'- aGAAgCGUGGCGCUccAUCCGcGGau -5'
6640 3' -58.6 NC_001847.1 + 115977 0.66 0.73055
Target:  5'- ---gUGCugCGCGGGGUaacaacGGGCGCg-- -3'
miRNA:   3'- agaaGCGugGCGCUCCA------UCCGCGgau -5'
6640 3' -58.6 NC_001847.1 + 115147 0.66 0.759601
Target:  5'- ---gUGCGCUGCucuGGcgGGGCGCCUGa -3'
miRNA:   3'- agaaGCGUGGCGcu-CCa-UCCGCGGAU- -5'
6640 3' -58.6 NC_001847.1 + 114937 0.67 0.670395
Target:  5'- --cUCGCGuuUgGCGGGGcgGGGCGCCg- -3'
miRNA:   3'- agaAGCGU--GgCGCUCCa-UCCGCGGau -5'
6640 3' -58.6 NC_001847.1 + 114384 0.66 0.769072
Target:  5'- aUCUgCGCGCCGaCGaAGGcgAGGCccGCCUc -3'
miRNA:   3'- -AGAaGCGUGGC-GC-UCCa-UCCG--CGGAu -5'
6640 3' -58.6 NC_001847.1 + 106753 0.73 0.382407
Target:  5'- --cUgGCGCCGCGGcGGgggGGGCGCCg- -3'
miRNA:   3'- agaAgCGUGGCGCU-CCa--UCCGCGGau -5'
6640 3' -58.6 NC_001847.1 + 105696 0.67 0.670395
Target:  5'- gCUUCG-GCCGCGGGc--GGCGCCa- -3'
miRNA:   3'- aGAAGCgUGGCGCUCcauCCGCGGau -5'
6640 3' -58.6 NC_001847.1 + 104374 0.69 0.558417
Target:  5'- ---aCGCGCCGCGAGGccagcacGGCGCg-- -3'
miRNA:   3'- agaaGCGUGGCGCUCCau-----CCGCGgau -5'
6640 3' -58.6 NC_001847.1 + 103909 0.69 0.548407
Target:  5'- ----gGCGCCGCGGccgcGGgcGGCGCCg- -3'
miRNA:   3'- agaagCGUGGCGCU----CCauCCGCGGau -5'
6640 3' -58.6 NC_001847.1 + 101885 0.67 0.710741
Target:  5'- cCUUUGCgcgcggACCGCGGcagcGG-AGGCGCCg- -3'
miRNA:   3'- aGAAGCG------UGGCGCU----CCaUCCGCGGau -5'
6640 3' -58.6 NC_001847.1 + 101456 0.67 0.700732
Target:  5'- ---cCGCGCCGCGAGcGccuGCGCCUc -3'
miRNA:   3'- agaaGCGUGGCGCUC-CaucCGCGGAu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.