miRNA display CGI


Results 21 - 40 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6640 3' -58.6 NC_001847.1 + 101375 0.74 0.334935
Target:  5'- --cUUGCGCCGCGGGGgcugcccgcGGCGCCg- -3'
miRNA:   3'- agaAGCGUGGCGCUCCau-------CCGCGGau -5'
6640 3' -58.6 NC_001847.1 + 101101 0.68 0.639777
Target:  5'- aCgcgCGCGCCGCGGGGcccauCGCCUGg -3'
miRNA:   3'- aGaa-GCGUGGCGCUCCaucc-GCGGAU- -5'
6640 3' -58.6 NC_001847.1 + 99286 0.67 0.710741
Target:  5'- ---cCGCAgCGCgucGAGGU-GGCGCCUc -3'
miRNA:   3'- agaaGCGUgGCG---CUCCAuCCGCGGAu -5'
6640 3' -58.6 NC_001847.1 + 97768 0.66 0.769072
Target:  5'- gUCagCGCACCGcCGGGGaugAGacGCGCCa- -3'
miRNA:   3'- -AGaaGCGUGGC-GCUCCa--UC--CGCGGau -5'
6640 3' -58.6 NC_001847.1 + 95382 0.68 0.638754
Target:  5'- ---cCGCGCCGCcggcucuGAGGccGGCGCCg- -3'
miRNA:   3'- agaaGCGUGGCG-------CUCCauCCGCGGau -5'
6640 3' -58.6 NC_001847.1 + 94762 0.95 0.01289
Target:  5'- cUCUUCGCACCGCGAGGUGaGCGCCUAc -3'
miRNA:   3'- -AGAAGCGUGGCGCUCCAUcCGCGGAU- -5'
6640 3' -58.6 NC_001847.1 + 93309 0.66 0.769072
Target:  5'- ---cCGCGCgCGCGuGuGUAGGCGCg-- -3'
miRNA:   3'- agaaGCGUG-GCGCuC-CAUCCGCGgau -5'
6640 3' -58.6 NC_001847.1 + 93280 0.67 0.670395
Target:  5'- --aUCGCGCCGCGAuGUcGGCGgCg- -3'
miRNA:   3'- agaAGCGUGGCGCUcCAuCCGCgGau -5'
6640 3' -58.6 NC_001847.1 + 93063 0.68 0.629548
Target:  5'- ----gGCACCGCGAGGccgauGCGCCg- -3'
miRNA:   3'- agaagCGUGGCGCUCCauc--CGCGGau -5'
6640 3' -58.6 NC_001847.1 + 91772 0.68 0.659188
Target:  5'- --aUCGCAgcgagcuCCGCGAGGUacgucuccAGGCGCg-- -3'
miRNA:   3'- agaAGCGU-------GGCGCUCCA--------UCCGCGgau -5'
6640 3' -58.6 NC_001847.1 + 90093 0.67 0.670395
Target:  5'- cUCUgggaCGcCACCGCGGGG--GGCGCUg- -3'
miRNA:   3'- -AGAa---GC-GUGGCGCUCCauCCGCGGau -5'
6640 3' -58.6 NC_001847.1 + 89990 0.74 0.323026
Target:  5'- gCUgCGCGCCGCGGGGcugcaccccgcagaAGGCGCCg- -3'
miRNA:   3'- aGAaGCGUGGCGCUCCa-------------UCCGCGGau -5'
6640 3' -58.6 NC_001847.1 + 89698 0.68 0.629548
Target:  5'- aUUUgcgCGCGCCGCGAc--GGGCGCCc- -3'
miRNA:   3'- -AGAa--GCGUGGCGCUccaUCCGCGGau -5'
6640 3' -58.6 NC_001847.1 + 88539 0.7 0.48973
Target:  5'- gCUcgUGCGCCGCGAGGcc-GCGCCg- -3'
miRNA:   3'- aGAa-GCGUGGCGCUCCaucCGCGGau -5'
6640 3' -58.6 NC_001847.1 + 88299 0.66 0.769072
Target:  5'- --cUUGCGCCGCGGGGgcGGuCGaCUUu -3'
miRNA:   3'- agaAGCGUGGCGCUCCauCC-GC-GGAu -5'
6640 3' -58.6 NC_001847.1 + 87906 0.66 0.778421
Target:  5'- gCUUUGCACaggggcggggCGUGGGGcUGGGCGCg-- -3'
miRNA:   3'- aGAAGCGUG----------GCGCUCC-AUCCGCGgau -5'
6640 3' -58.6 NC_001847.1 + 86515 0.66 0.759601
Target:  5'- --gUCGCGCgGCG-GcUGGGCGCCc- -3'
miRNA:   3'- agaAGCGUGgCGCuCcAUCCGCGGau -5'
6640 3' -58.6 NC_001847.1 + 86442 0.66 0.769072
Target:  5'- uUCaUCGCGCCGCGcugccuGGacgccgacGGCGCCg- -3'
miRNA:   3'- -AGaAGCGUGGCGCu-----CCau------CCGCGGau -5'
6640 3' -58.6 NC_001847.1 + 86298 0.75 0.265716
Target:  5'- --cUCGCGCCGCGcGGccgAGGCGCCc- -3'
miRNA:   3'- agaAGCGUGGCGCuCCa--UCCGCGGau -5'
6640 3' -58.6 NC_001847.1 + 85250 0.66 0.740331
Target:  5'- ----gGCGCCaggugcGCGAGGUAGGUgGCCg- -3'
miRNA:   3'- agaagCGUGG------CGCUCCAUCCG-CGGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.