miRNA display CGI


Results 41 - 60 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6640 3' -58.6 NC_001847.1 + 83738 0.69 0.578584
Target:  5'- gUCUgCGcCGCCGCaAGGUucGGCGCCg- -3'
miRNA:   3'- -AGAaGC-GUGGCGcUCCAu-CCGCGGau -5'
6640 3' -58.6 NC_001847.1 + 82667 0.66 0.73055
Target:  5'- gCggCGCGCCGCGcucgugcuguGGUcaugagucGGGCGCCg- -3'
miRNA:   3'- aGaaGCGUGGCGCu---------CCA--------UCCGCGGau -5'
6640 3' -58.6 NC_001847.1 + 81172 0.66 0.759601
Target:  5'- ---cCGCGCCGCucgGAGGgcucgcggcGGCGCCa- -3'
miRNA:   3'- agaaGCGUGGCG---CUCCau-------CCGCGGau -5'
6640 3' -58.6 NC_001847.1 + 78322 0.72 0.43415
Target:  5'- gCgcgCGCGCCGCGGGcccggcuUGGGCGCCg- -3'
miRNA:   3'- aGaa-GCGUGGCGCUCc------AUCCGCGGau -5'
6640 3' -58.6 NC_001847.1 + 77636 0.66 0.778421
Target:  5'- aCggCGCGCCGCccgugGAGGccuucgacgcGGGCGCCg- -3'
miRNA:   3'- aGaaGCGUGGCG-----CUCCa---------UCCGCGGau -5'
6640 3' -58.6 NC_001847.1 + 76628 0.68 0.608083
Target:  5'- cUCUUCGUgucccugcccgucGCCcugcccgaggGCGGGGaGGGCGCCUu -3'
miRNA:   3'- -AGAAGCG-------------UGG----------CGCUCCaUCCGCGGAu -5'
6640 3' -58.6 NC_001847.1 + 75394 0.69 0.547409
Target:  5'- cUCgcgUCGcCGCCGCGAGGcGGGCaucgcggGCCa- -3'
miRNA:   3'- -AGa--AGC-GUGGCGCUCCaUCCG-------CGGau -5'
6640 3' -58.6 NC_001847.1 + 71164 0.67 0.68055
Target:  5'- aCUUgaGCGCCGCGAacagGGUGucgcgcagcgccGGCGCCg- -3'
miRNA:   3'- aGAAg-CGUGGCGCU----CCAU------------CCGCGGau -5'
6640 3' -58.6 NC_001847.1 + 70752 0.67 0.690665
Target:  5'- ----aGCGCCGCGcAGaGcGGGCGCCg- -3'
miRNA:   3'- agaagCGUGGCGC-UC-CaUCCGCGGau -5'
6640 3' -58.6 NC_001847.1 + 70679 0.66 0.759601
Target:  5'- gCUUCGgccccccgcgcCGCCGCGGGcGgcggcggGGGCGCCc- -3'
miRNA:   3'- aGAAGC-----------GUGGCGCUC-Ca------UCCGCGGau -5'
6640 3' -58.6 NC_001847.1 + 70266 0.71 0.470816
Target:  5'- cUCgcUGUACCGCGAGGacgcGCGCCUGg -3'
miRNA:   3'- -AGaaGCGUGGCGCUCCauc-CGCGGAU- -5'
6640 3' -58.6 NC_001847.1 + 69654 0.66 0.73055
Target:  5'- ---cCGCGCCGCGAcccgguacgcguGGUAGGCaGCg-- -3'
miRNA:   3'- agaaGCGUGGCGCU------------CCAUCCG-CGgau -5'
6640 3' -58.6 NC_001847.1 + 66318 0.69 0.598904
Target:  5'- cUCUUCGCGgCGCccugcggcggguGGGGcgcGGGCGCCg- -3'
miRNA:   3'- -AGAAGCGUgGCG------------CUCCa--UCCGCGGau -5'
6640 3' -58.6 NC_001847.1 + 66285 0.67 0.68055
Target:  5'- ----gGCGgCGCGA-GUAGGCGCCg- -3'
miRNA:   3'- agaagCGUgGCGCUcCAUCCGCGGau -5'
6640 3' -58.6 NC_001847.1 + 65864 0.68 0.65
Target:  5'- cCUUCuGCGCgGCGAGcugacGUGGGgGCCg- -3'
miRNA:   3'- aGAAG-CGUGgCGCUC-----CAUCCgCGGau -5'
6640 3' -58.6 NC_001847.1 + 63293 0.66 0.769072
Target:  5'- gCUUC-CACCGCuGGGGaGGGCGUg-- -3'
miRNA:   3'- aGAAGcGUGGCG-CUCCaUCCGCGgau -5'
6640 3' -58.6 NC_001847.1 + 62486 0.67 0.68055
Target:  5'- --gUCGCcggcgggcgGCCGCGGGGU-GGCgGCCa- -3'
miRNA:   3'- agaAGCG---------UGGCGCUCCAuCCG-CGGau -5'
6640 3' -58.6 NC_001847.1 + 62459 0.67 0.699728
Target:  5'- gCUcUGCGCCGCGuGGUgugccacAGGCuGCCg- -3'
miRNA:   3'- aGAaGCGUGGCGCuCCA-------UCCG-CGGau -5'
6640 3' -58.6 NC_001847.1 + 61198 0.67 0.690665
Target:  5'- gUUUUGCGCgCGCGccAGGUAcGCGCCg- -3'
miRNA:   3'- aGAAGCGUG-GCGC--UCCAUcCGCGGau -5'
6640 3' -58.6 NC_001847.1 + 60043 0.66 0.750018
Target:  5'- cUCUUCGUcgGgCGCGAGGc-GGCGCg-- -3'
miRNA:   3'- -AGAAGCG--UgGCGCUCCauCCGCGgau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.