miRNA display CGI


Results 61 - 80 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6640 3' -58.6 NC_001847.1 + 56228 0.68 0.65
Target:  5'- gCUUCGUccauCUGCacGAGGUagAGGCGCCg- -3'
miRNA:   3'- aGAAGCGu---GGCG--CUCCA--UCCGCGGau -5'
6640 3' -58.6 NC_001847.1 + 56035 0.66 0.769072
Target:  5'- cCUUUG-ACCGCGAcgacgaccccuGGgAGGCGCCg- -3'
miRNA:   3'- aGAAGCgUGGCGCU-----------CCaUCCGCGGau -5'
6640 3' -58.6 NC_001847.1 + 55134 0.73 0.382407
Target:  5'- gCUUCGCAuCCGCGcGGgcgcgGGGCGUCa- -3'
miRNA:   3'- aGAAGCGU-GGCGCuCCa----UCCGCGGau -5'
6640 3' -58.6 NC_001847.1 + 53377 0.66 0.769072
Target:  5'- ----gGCACCGCGAGc---GCGCCUGc -3'
miRNA:   3'- agaagCGUGGCGCUCcaucCGCGGAU- -5'
6640 3' -58.6 NC_001847.1 + 52299 0.67 0.690665
Target:  5'- ---gCGCgACCGCGGgcgcGGgcGGCGCCa- -3'
miRNA:   3'- agaaGCG-UGGCGCU----CCauCCGCGGau -5'
6640 3' -58.6 NC_001847.1 + 51549 0.67 0.720683
Target:  5'- gCUgcgCGCGCgCGCGugcucGGGcucgcGGGCGCCUAc -3'
miRNA:   3'- aGAa--GCGUG-GCGC-----UCCa----UCCGCGGAU- -5'
6640 3' -58.6 NC_001847.1 + 51509 0.69 0.548407
Target:  5'- ----aGCGCCGCGccGGUGcGGCGCCg- -3'
miRNA:   3'- agaagCGUGGCGCu-CCAU-CCGCGGau -5'
6640 3' -58.6 NC_001847.1 + 51342 0.66 0.750018
Target:  5'- -gUUCGCguGCCGCG-GGUuggcgaacagGGGCGCUUc -3'
miRNA:   3'- agAAGCG--UGGCGCuCCA----------UCCGCGGAu -5'
6640 3' -58.6 NC_001847.1 + 50595 0.68 0.65
Target:  5'- cCUggaGCGCUGCGAcGcGGGCGCCUu -3'
miRNA:   3'- aGAag-CGUGGCGCUcCaUCCGCGGAu -5'
6640 3' -58.6 NC_001847.1 + 50402 0.68 0.660209
Target:  5'- --cUCGUGCUGCGGuuGGUGcGCGCCUGc -3'
miRNA:   3'- agaAGCGUGGCGCU--CCAUcCGCGGAU- -5'
6640 3' -58.6 NC_001847.1 + 49939 0.68 0.609104
Target:  5'- cUUUUGCACCGCcGGGcugcccGGCGCCg- -3'
miRNA:   3'- aGAAGCGUGGCGcUCCau----CCGCGGau -5'
6640 3' -58.6 NC_001847.1 + 49239 0.67 0.710741
Target:  5'- ---aCGCaaACgGCGGGGU-GGCGCCg- -3'
miRNA:   3'- agaaGCG--UGgCGCUCCAuCCGCGGau -5'
6640 3' -58.6 NC_001847.1 + 48061 0.68 0.65
Target:  5'- cCgcgCGCGCCGCGAaaGGcggGGGCGCa-- -3'
miRNA:   3'- aGaa-GCGUGGCGCU--CCa--UCCGCGgau -5'
6640 3' -58.6 NC_001847.1 + 44595 0.73 0.350269
Target:  5'- cCUcgCGCGCgGCGAGGgccgccaGGGCGCCg- -3'
miRNA:   3'- aGAa-GCGUGgCGCUCCa------UCCGCGGau -5'
6640 3' -58.6 NC_001847.1 + 43564 0.67 0.690665
Target:  5'- ----aGCGCCGCGAGGauggccgAGGCGUa-- -3'
miRNA:   3'- agaagCGUGGCGCUCCa------UCCGCGgau -5'
6640 3' -58.6 NC_001847.1 + 43535 0.67 0.720683
Target:  5'- ---cCGCAgCCGCGAGG-AGaaGCGCCg- -3'
miRNA:   3'- agaaGCGU-GGCGCUCCaUC--CGCGGau -5'
6640 3' -58.6 NC_001847.1 + 42875 0.71 0.443163
Target:  5'- ---gCGCACCGCGccacgcuaGUGGGCGCCUu -3'
miRNA:   3'- agaaGCGUGGCGCuc------CAUCCGCGGAu -5'
6640 3' -58.6 NC_001847.1 + 41989 0.66 0.750018
Target:  5'- --gUCGCGgccgccuuucCCGCGGGG--GGCGCCg- -3'
miRNA:   3'- agaAGCGU----------GGCGCUCCauCCGCGGau -5'
6640 3' -58.6 NC_001847.1 + 41812 0.68 0.65
Target:  5'- ---aCGCACCGCGcGGGcGGGCGgCg- -3'
miRNA:   3'- agaaGCGUGGCGC-UCCaUCCGCgGau -5'
6640 3' -58.6 NC_001847.1 + 40152 0.66 0.740331
Target:  5'- aCUUCGCAgUGCGGuGacUGGGCGuCCUGg -3'
miRNA:   3'- aGAAGCGUgGCGCUcC--AUCCGC-GGAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.