miRNA display CGI


Results 1 - 20 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6640 3' -58.6 NC_001847.1 + 89698 0.68 0.629548
Target:  5'- aUUUgcgCGCGCCGCGAc--GGGCGCCc- -3'
miRNA:   3'- -AGAa--GCGUGGCGCUccaUCCGCGGau -5'
6640 3' -58.6 NC_001847.1 + 104374 0.69 0.558417
Target:  5'- ---aCGCGCCGCGAGGccagcacGGCGCg-- -3'
miRNA:   3'- agaaGCGUGGCGCUCCau-----CCGCGgau -5'
6640 3' -58.6 NC_001847.1 + 5240 0.69 0.568478
Target:  5'- cUCcgUGCAggucuCCGCGGGGgaggGGGCGCUUGa -3'
miRNA:   3'- -AGaaGCGU-----GGCGCUCCa---UCCGCGGAU- -5'
6640 3' -58.6 NC_001847.1 + 39827 0.69 0.568478
Target:  5'- cCUUCggcccugccgGCGCCGCGccuGG-AGGCGCCa- -3'
miRNA:   3'- aGAAG----------CGUGGCGCu--CCaUCCGCGGau -5'
6640 3' -58.6 NC_001847.1 + 134120 0.69 0.588728
Target:  5'- gCUgcggCGCGCCGCGGGc--GGCgGCCUGg -3'
miRNA:   3'- aGAa---GCGUGGCGCUCcauCCG-CGGAU- -5'
6640 3' -58.6 NC_001847.1 + 66318 0.69 0.598904
Target:  5'- cUCUUCGCGgCGCccugcggcggguGGGGcgcGGGCGCCg- -3'
miRNA:   3'- -AGAAGCGUgGCG------------CUCCa--UCCGCGGau -5'
6640 3' -58.6 NC_001847.1 + 76628 0.68 0.608083
Target:  5'- cUCUUCGUgucccugcccgucGCCcugcccgaggGCGGGGaGGGCGCCUu -3'
miRNA:   3'- -AGAAGCG-------------UGG----------CGCUCCaUCCGCGGAu -5'
6640 3' -58.6 NC_001847.1 + 22180 0.68 0.609104
Target:  5'- --aUCGCGCCGCGAauGcGcGGGCGCUg- -3'
miRNA:   3'- agaAGCGUGGCGCU--C-CaUCCGCGGau -5'
6640 3' -58.6 NC_001847.1 + 93063 0.68 0.629548
Target:  5'- ----gGCACCGCGAGGccgauGCGCCg- -3'
miRNA:   3'- agaagCGUGGCGCUCCauc--CGCGGau -5'
6640 3' -58.6 NC_001847.1 + 103909 0.69 0.548407
Target:  5'- ----gGCGCCGCGGccgcGGgcGGCGCCg- -3'
miRNA:   3'- agaagCGUGGCGCU----CCauCCGCGGau -5'
6640 3' -58.6 NC_001847.1 + 33226 0.7 0.508991
Target:  5'- gCUUgGCGCCGCGccGGGcgccgcGGCGCCUc -3'
miRNA:   3'- aGAAgCGUGGCGC--UCCau----CCGCGGAu -5'
6640 3' -58.6 NC_001847.1 + 34159 0.71 0.480227
Target:  5'- ---gCGCugCGCGAGGcggcugAGGCGCUg- -3'
miRNA:   3'- agaaGCGugGCGCUCCa-----UCCGCGGau -5'
6640 3' -58.6 NC_001847.1 + 89990 0.74 0.323026
Target:  5'- gCUgCGCGCCGCGGGGcugcaccccgcagaAGGCGCCg- -3'
miRNA:   3'- aGAaGCGUGGCGCUCCa-------------UCCGCGGau -5'
6640 3' -58.6 NC_001847.1 + 101375 0.74 0.334935
Target:  5'- --cUUGCGCCGCGGGGgcugcccgcGGCGCCg- -3'
miRNA:   3'- agaAGCGUGGCGCUCCau-------CCGCGGau -5'
6640 3' -58.6 NC_001847.1 + 35838 0.73 0.358121
Target:  5'- aUCgacgCGCugCGCGAGcugAGGCGCCa- -3'
miRNA:   3'- -AGaa--GCGugGCGCUCca-UCCGCGGau -5'
6640 3' -58.6 NC_001847.1 + 55134 0.73 0.382407
Target:  5'- gCUUCGCAuCCGCGcGGgcgcgGGGCGUCa- -3'
miRNA:   3'- aGAAGCGU-GGCGCuCCa----UCCGCGGau -5'
6640 3' -58.6 NC_001847.1 + 106753 0.73 0.382407
Target:  5'- --cUgGCGCCGCGGcGGgggGGGCGCCg- -3'
miRNA:   3'- agaAgCGUGGCGCU-CCa--UCCGCGGau -5'
6640 3' -58.6 NC_001847.1 + 42875 0.71 0.443163
Target:  5'- ---gCGCACCGCGccacgcuaGUGGGCGCCUu -3'
miRNA:   3'- agaaGCGUGGCGCuc------CAUCCGCGGAu -5'
6640 3' -58.6 NC_001847.1 + 17798 0.71 0.452281
Target:  5'- gCUUUGCucgGCCGCGGGGggcgAGGcCGCCc- -3'
miRNA:   3'- aGAAGCG---UGGCGCUCCa---UCC-GCGGau -5'
6640 3' -58.6 NC_001847.1 + 70266 0.71 0.470816
Target:  5'- cUCgcUGUACCGCGAGGacgcGCGCCUGg -3'
miRNA:   3'- -AGaaGCGUGGCGCUCCauc-CGCGGAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.