miRNA display CGI


Results 61 - 80 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6640 3' -58.6 NC_001847.1 + 124564 0.68 0.629548
Target:  5'- ---cCGCGCgCGCGGGGgggccgccGGCGCCg- -3'
miRNA:   3'- agaaGCGUG-GCGCUCCau------CCGCGGau -5'
6640 3' -58.6 NC_001847.1 + 95382 0.68 0.638754
Target:  5'- ---cCGCGCCGCcggcucuGAGGccGGCGCCg- -3'
miRNA:   3'- agaaGCGUGGCG-------CUCCauCCGCGGau -5'
6640 3' -58.6 NC_001847.1 + 51509 0.69 0.548407
Target:  5'- ----aGCGCCGCGccGGUGcGGCGCCg- -3'
miRNA:   3'- agaagCGUGGCGCu-CCAU-CCGCGGau -5'
6640 3' -58.6 NC_001847.1 + 1561 0.69 0.558417
Target:  5'- ---aCGCGCCGCGAGGccagcacGGCGCg-- -3'
miRNA:   3'- agaaGCGUGGCGCUCCau-----CCGCGgau -5'
6640 3' -58.6 NC_001847.1 + 20189 0.69 0.578584
Target:  5'- --gUCGUagACCGCGGGGc-GGCGCCc- -3'
miRNA:   3'- agaAGCG--UGGCGCUCCauCCGCGGau -5'
6640 3' -58.6 NC_001847.1 + 83738 0.69 0.578584
Target:  5'- gUCUgCGcCGCCGCaAGGUucGGCGCCg- -3'
miRNA:   3'- -AGAaGC-GUGGCGcUCCAu-CCGCGGau -5'
6640 3' -58.6 NC_001847.1 + 130134 0.69 0.578584
Target:  5'- --cUCGCG-CGCGAGGgcgAGGCGCa-- -3'
miRNA:   3'- agaAGCGUgGCGCUCCa--UCCGCGgau -5'
6640 3' -58.6 NC_001847.1 + 31307 0.69 0.588728
Target:  5'- gCUgcggCGCGCCGCGGGc--GGCgGCCUGg -3'
miRNA:   3'- aGAa---GCGUGGCGCUCcauCCG-CGGAU- -5'
6640 3' -58.6 NC_001847.1 + 49939 0.68 0.609104
Target:  5'- cUUUUGCACCGCcGGGcugcccGGCGCCg- -3'
miRNA:   3'- aGAAGCGUGGCGcUCCau----CCGCGGau -5'
6640 3' -58.6 NC_001847.1 + 21751 0.68 0.629548
Target:  5'- ---cCGCGCgCGCGGGGgggccgccGGCGCCg- -3'
miRNA:   3'- agaaGCGUG-GCGCUCCau------CCGCGGau -5'
6640 3' -58.6 NC_001847.1 + 1096 0.69 0.548407
Target:  5'- ----gGCGCCGCGGccgcGGgcGGCGCCg- -3'
miRNA:   3'- agaagCGUGGCGCU----CCauCCGCGGau -5'
6640 3' -58.6 NC_001847.1 + 75394 0.69 0.547409
Target:  5'- cUCgcgUCGcCGCCGCGAGGcGGGCaucgcggGCCa- -3'
miRNA:   3'- -AGa--AGC-GUGGCGCUCCaUCCG-------CGGau -5'
6640 3' -58.6 NC_001847.1 + 114384 0.66 0.769072
Target:  5'- aUCUgCGCGCCGaCGaAGGcgAGGCccGCCUc -3'
miRNA:   3'- -AGAaGCGUGGC-GC-UCCa-UCCG--CGGAu -5'
6640 3' -58.6 NC_001847.1 + 13857 0.74 0.30576
Target:  5'- uUCUUCGCugauggUgGCGAGGggGGGCGCCUu -3'
miRNA:   3'- -AGAAGCGu-----GgCGCUCCa-UCCGCGGAu -5'
6640 3' -58.6 NC_001847.1 + 123290 0.74 0.334935
Target:  5'- --cUCGCGCCGCccgcAGGgcGGCGCCa- -3'
miRNA:   3'- agaAGCGUGGCGc---UCCauCCGCGGau -5'
6640 3' -58.6 NC_001847.1 + 44595 0.73 0.350269
Target:  5'- cCUcgCGCGCgGCGAGGgccgccaGGGCGCCg- -3'
miRNA:   3'- aGAa-GCGUGgCGCUCCa------UCCGCGGau -5'
6640 3' -58.6 NC_001847.1 + 3940 0.73 0.382407
Target:  5'- --cUgGCGCCGCGGcGGgggGGGCGCCg- -3'
miRNA:   3'- agaAgCGUGGCGCU-CCa--UCCGCGGau -5'
6640 3' -58.6 NC_001847.1 + 11827 0.72 0.390743
Target:  5'- aCagCGCGCgGgGGGGgGGGCGCCUAg -3'
miRNA:   3'- aGaaGCGUGgCgCUCCaUCCGCGGAU- -5'
6640 3' -58.6 NC_001847.1 + 78322 0.72 0.43415
Target:  5'- gCgcgCGCGCCGCGGGcccggcuUGGGCGCCg- -3'
miRNA:   3'- aGaa-GCGUGGCGCUCc------AUCCGCGGau -5'
6640 3' -58.6 NC_001847.1 + 88539 0.7 0.48973
Target:  5'- gCUcgUGCGCCGCGAGGcc-GCGCCg- -3'
miRNA:   3'- aGAa-GCGUGGCGCUCCaucCGCGGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.