Results 1 - 20 of 117 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6640 | 3' | -58.6 | NC_001847.1 | + | 86298 | 0.75 | 0.265716 |
Target: 5'- --cUCGCGCCGCGcGGccgAGGCGCCc- -3' miRNA: 3'- agaAGCGUGGCGCuCCa--UCCGCGGau -5' |
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6640 | 3' | -58.6 | NC_001847.1 | + | 21751 | 0.68 | 0.629548 |
Target: 5'- ---cCGCGCgCGCGGGGgggccgccGGCGCCg- -3' miRNA: 3'- agaaGCGUG-GCGCUCCau------CCGCGGau -5' |
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6640 | 3' | -58.6 | NC_001847.1 | + | 48061 | 0.68 | 0.65 |
Target: 5'- cCgcgCGCGCCGCGAaaGGcggGGGCGCa-- -3' miRNA: 3'- aGaa-GCGUGGCGCU--CCa--UCCGCGgau -5' |
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6640 | 3' | -58.6 | NC_001847.1 | + | 114384 | 0.66 | 0.769072 |
Target: 5'- aUCUgCGCGCCGaCGaAGGcgAGGCccGCCUc -3' miRNA: 3'- -AGAaGCGUGGC-GC-UCCa-UCCG--CGGAu -5' |
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6640 | 3' | -58.6 | NC_001847.1 | + | 3940 | 0.73 | 0.382407 |
Target: 5'- --cUgGCGCCGCGGcGGgggGGGCGCCg- -3' miRNA: 3'- agaAgCGUGGCGCU-CCa--UCCGCGGau -5' |
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6640 | 3' | -58.6 | NC_001847.1 | + | 11827 | 0.72 | 0.390743 |
Target: 5'- aCagCGCGCgGgGGGGgGGGCGCCUAg -3' miRNA: 3'- aGaaGCGUGgCgCUCCaUCCGCGGAU- -5' |
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6640 | 3' | -58.6 | NC_001847.1 | + | 88539 | 0.7 | 0.48973 |
Target: 5'- gCUcgUGCGCCGCGAGGcc-GCGCCg- -3' miRNA: 3'- aGAa-GCGUGGCGCUCCaucCGCGGau -5' |
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6640 | 3' | -58.6 | NC_001847.1 | + | 75394 | 0.69 | 0.547409 |
Target: 5'- cUCgcgUCGcCGCCGCGAGGcGGGCaucgcggGCCa- -3' miRNA: 3'- -AGa--AGC-GUGGCGCUCCaUCCG-------CGGau -5' |
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6640 | 3' | -58.6 | NC_001847.1 | + | 1561 | 0.69 | 0.558417 |
Target: 5'- ---aCGCGCCGCGAGGccagcacGGCGCg-- -3' miRNA: 3'- agaaGCGUGGCGCUCCau-----CCGCGgau -5' |
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6640 | 3' | -58.6 | NC_001847.1 | + | 49939 | 0.68 | 0.609104 |
Target: 5'- cUUUUGCACCGCcGGGcugcccGGCGCCg- -3' miRNA: 3'- aGAAGCGUGGCGcUCCau----CCGCGGau -5' |
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6640 | 3' | -58.6 | NC_001847.1 | + | 83738 | 0.69 | 0.578584 |
Target: 5'- gUCUgCGcCGCCGCaAGGUucGGCGCCg- -3' miRNA: 3'- -AGAaGC-GUGGCGcUCCAu-CCGCGGau -5' |
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6640 | 3' | -58.6 | NC_001847.1 | + | 51509 | 0.69 | 0.548407 |
Target: 5'- ----aGCGCCGCGccGGUGcGGCGCCg- -3' miRNA: 3'- agaagCGUGGCGCu-CCAU-CCGCGGau -5' |
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6640 | 3' | -58.6 | NC_001847.1 | + | 13857 | 0.74 | 0.30576 |
Target: 5'- uUCUUCGCugauggUgGCGAGGggGGGCGCCUu -3' miRNA: 3'- -AGAAGCGu-----GgCGCUCCa-UCCGCGGAu -5' |
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6640 | 3' | -58.6 | NC_001847.1 | + | 130134 | 0.69 | 0.578584 |
Target: 5'- --cUCGCG-CGCGAGGgcgAGGCGCa-- -3' miRNA: 3'- agaAGCGUgGCGCUCCa--UCCGCGgau -5' |
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6640 | 3' | -58.6 | NC_001847.1 | + | 123290 | 0.74 | 0.334935 |
Target: 5'- --cUCGCGCCGCccgcAGGgcGGCGCCa- -3' miRNA: 3'- agaAGCGUGGCGc---UCCauCCGCGGau -5' |
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6640 | 3' | -58.6 | NC_001847.1 | + | 1096 | 0.69 | 0.548407 |
Target: 5'- ----gGCGCCGCGGccgcGGgcGGCGCCg- -3' miRNA: 3'- agaagCGUGGCGCU----CCauCCGCGGau -5' |
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6640 | 3' | -58.6 | NC_001847.1 | + | 31307 | 0.69 | 0.588728 |
Target: 5'- gCUgcggCGCGCCGCGGGc--GGCgGCCUGg -3' miRNA: 3'- aGAa---GCGUGGCGCUCcauCCG-CGGAU- -5' |
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6640 | 3' | -58.6 | NC_001847.1 | + | 101101 | 0.68 | 0.639777 |
Target: 5'- aCgcgCGCGCCGCGGGGcccauCGCCUGg -3' miRNA: 3'- aGaa-GCGUGGCGCUCCaucc-GCGGAU- -5' |
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6640 | 3' | -58.6 | NC_001847.1 | + | 44595 | 0.73 | 0.350269 |
Target: 5'- cCUcgCGCGCgGCGAGGgccgccaGGGCGCCg- -3' miRNA: 3'- aGAa-GCGUGgCGCUCCa------UCCGCGGau -5' |
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6640 | 3' | -58.6 | NC_001847.1 | + | 78322 | 0.72 | 0.43415 |
Target: 5'- gCgcgCGCGCCGCGGGcccggcuUGGGCGCCg- -3' miRNA: 3'- aGaa-GCGUGGCGCUCc------AUCCGCGGau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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