miRNA display CGI


Results 1 - 20 of 261 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6640 5' -58.4 NC_001847.1 + 118207 0.66 0.812458
Target:  5'- cCCGuCGCGCACUgagCAGaccGGcgucugCGCCGAGc -3'
miRNA:   3'- aGGU-GCGCGUGGa--GUU---CCa-----GCGGCUC- -5'
6640 5' -58.4 NC_001847.1 + 25207 0.66 0.812458
Target:  5'- cCCGCGCGCgGCCggCAaagagcaugaucGGcGUCGCgGGGa -3'
miRNA:   3'- aGGUGCGCG-UGGa-GU------------UC-CAGCGgCUC- -5'
6640 5' -58.4 NC_001847.1 + 12576 0.66 0.812458
Target:  5'- cCUACGCGCACCUaGAGcG-CGaCGAGc -3'
miRNA:   3'- aGGUGCGCGUGGAgUUC-CaGCgGCUC- -5'
6640 5' -58.4 NC_001847.1 + 81386 0.66 0.812458
Target:  5'- cCCuCGC-CGCCUC-GGGcCGCCGGa -3'
miRNA:   3'- aGGuGCGcGUGGAGuUCCaGCGGCUc -5'
6640 5' -58.4 NC_001847.1 + 68872 0.66 0.812458
Target:  5'- cUCGCGC-CGCC-CGGGaGUCGCCGcGa -3'
miRNA:   3'- aGGUGCGcGUGGaGUUC-CAGCGGCuC- -5'
6640 5' -58.4 NC_001847.1 + 34054 0.66 0.812458
Target:  5'- gCgGCGCGCGCguuuUUCGAGGggcaCGCgGAGc -3'
miRNA:   3'- aGgUGCGCGUG----GAGUUCCa---GCGgCUC- -5'
6640 5' -58.4 NC_001847.1 + 19851 0.66 0.812458
Target:  5'- cCUugGCccGCGCC-CGGGGgCGCCGGc -3'
miRNA:   3'- aGGugCG--CGUGGaGUUCCaGCGGCUc -5'
6640 5' -58.4 NC_001847.1 + 63650 0.66 0.812458
Target:  5'- -gCAcCGCGCACCgccgcCAccGUUGCCGGGc -3'
miRNA:   3'- agGU-GCGCGUGGa----GUucCAGCGGCUC- -5'
6640 5' -58.4 NC_001847.1 + 113027 0.66 0.812458
Target:  5'- gCCGC-CGCGCgUCuGGGaCGCCGGc -3'
miRNA:   3'- aGGUGcGCGUGgAGuUCCaGCGGCUc -5'
6640 5' -58.4 NC_001847.1 + 38223 0.66 0.812458
Target:  5'- cCCGggcCGCGCGCCUCuacgcGGcCGCCa-- -3'
miRNA:   3'- aGGU---GCGCGUGGAGuu---CCaGCGGcuc -5'
6640 5' -58.4 NC_001847.1 + 123290 0.66 0.812458
Target:  5'- cUCGCGC-CGCCcgCAGGGcggCGCCaGAGg -3'
miRNA:   3'- aGGUGCGcGUGGa-GUUCCa--GCGG-CUC- -5'
6640 5' -58.4 NC_001847.1 + 113731 0.66 0.811594
Target:  5'- -aCGCGCccaGCACCUCGuccuccgAGGuauaaucgUCGCUGAGa -3'
miRNA:   3'- agGUGCG---CGUGGAGU-------UCC--------AGCGGCUC- -5'
6640 5' -58.4 NC_001847.1 + 80013 0.66 0.80725
Target:  5'- -aCGCGCGCGCgUUuggcgcggggGGGGUcggcgucaucgccgcCGCCGAGg -3'
miRNA:   3'- agGUGCGCGUGgAG----------UUCCA---------------GCGGCUC- -5'
6640 5' -58.4 NC_001847.1 + 106049 0.66 0.80725
Target:  5'- gCCGCcCGCGCCgugcucgccggcggCAGGGgCGCCGGc -3'
miRNA:   3'- aGGUGcGCGUGGa-------------GUUCCaGCGGCUc -5'
6640 5' -58.4 NC_001847.1 + 3236 0.66 0.80725
Target:  5'- gCCGCcCGCGCCgugcucgccggcggCAGGGgCGCCGGc -3'
miRNA:   3'- aGGUGcGCGUGGa-------------GUUCCaGCGGCUc -5'
6640 5' -58.4 NC_001847.1 + 15732 0.66 0.803748
Target:  5'- cUCgAUGCGCaACCUgGAGGgCGCCu-- -3'
miRNA:   3'- -AGgUGCGCG-UGGAgUUCCaGCGGcuc -5'
6640 5' -58.4 NC_001847.1 + 132164 0.66 0.803748
Target:  5'- cUCCAgCGCGCgGCCcCGGcGGcgcugcgCGCCGAGg -3'
miRNA:   3'- -AGGU-GCGCG-UGGaGUU-CCa------GCGGCUC- -5'
6640 5' -58.4 NC_001847.1 + 39378 0.66 0.803748
Target:  5'- cUCCGCGaCGC-CgUCGGGGagccggCGCCGGc -3'
miRNA:   3'- -AGGUGC-GCGuGgAGUUCCa-----GCGGCUc -5'
6640 5' -58.4 NC_001847.1 + 19358 0.66 0.803748
Target:  5'- cUUGCGCGCGCC-CGAcGGUgGCCaGGGc -3'
miRNA:   3'- aGGUGCGCGUGGaGUU-CCAgCGG-CUC- -5'
6640 5' -58.4 NC_001847.1 + 132097 0.66 0.803748
Target:  5'- cCCggaGCGCGUG-CUCcGGGcCGCCGAGc -3'
miRNA:   3'- aGG---UGCGCGUgGAGuUCCaGCGGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.