miRNA display CGI


Results 1 - 20 of 309 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6641 3' -54.3 NC_001847.1 + 16934 0.66 0.928531
Target:  5'- --uCCAGCgaugcguUUCGCAGGGCCucguaagagggccggGCGGCa -3'
miRNA:   3'- aauGGUUGau-----GAGCGUCUCGG---------------CGCUG- -5'
6641 3' -54.3 NC_001847.1 + 110248 0.66 0.926335
Target:  5'- aUGCgCGGcCUGCUCGCccgGGAcgagucgacgcGCUGCGACa -3'
miRNA:   3'- aAUG-GUU-GAUGAGCG---UCU-----------CGGCGCUG- -5'
6641 3' -54.3 NC_001847.1 + 13416 0.66 0.926335
Target:  5'- gUUugUAGC-GCUCGCGGAGCgG-GGCc -3'
miRNA:   3'- -AAugGUUGaUGAGCGUCUCGgCgCUG- -5'
6641 3' -54.3 NC_001847.1 + 116525 0.66 0.926335
Target:  5'- cUGCCugcGCUACgcgcgCGCcGAcGCCGCgGACg -3'
miRNA:   3'- aAUGGu--UGAUGa----GCGuCU-CGGCG-CUG- -5'
6641 3' -54.3 NC_001847.1 + 52115 0.66 0.926335
Target:  5'- -cACUAGCgGC-CGCGG-GCCgGCGGCg -3'
miRNA:   3'- aaUGGUUGaUGaGCGUCuCGG-CGCUG- -5'
6641 3' -54.3 NC_001847.1 + 8065 0.66 0.926335
Target:  5'- -gGCCcGCg---CGCAGAggggggcaccGCCGCGGCg -3'
miRNA:   3'- aaUGGuUGaugaGCGUCU----------CGGCGCUG- -5'
6641 3' -54.3 NC_001847.1 + 29288 0.66 0.926335
Target:  5'- -cGCgCGGCgcugGCg-GCAGAgGCCGCGGCc -3'
miRNA:   3'- aaUG-GUUGa---UGagCGUCU-CGGCGCUG- -5'
6641 3' -54.3 NC_001847.1 + 3577 0.66 0.926335
Target:  5'- -cGCCAGCUGCagGUccGGGCCcGCGAg -3'
miRNA:   3'- aaUGGUUGAUGagCGu-CUCGG-CGCUg -5'
6641 3' -54.3 NC_001847.1 + 72782 0.66 0.926335
Target:  5'- -cACCAGCUGCgCaCGGGGCUGCa-- -3'
miRNA:   3'- aaUGGUUGAUGaGcGUCUCGGCGcug -5'
6641 3' -54.3 NC_001847.1 + 105686 0.66 0.926335
Target:  5'- -gGCCGACg---CGCGGGccGCCGCGcCg -3'
miRNA:   3'- aaUGGUUGaugaGCGUCU--CGGCGCuG- -5'
6641 3' -54.3 NC_001847.1 + 49392 0.66 0.926335
Target:  5'- cUACCGGCcuggguggCGCGGGGCUGaCGGCc -3'
miRNA:   3'- aAUGGUUGauga----GCGUCUCGGC-GCUG- -5'
6641 3' -54.3 NC_001847.1 + 2873 0.66 0.926335
Target:  5'- -gGCCGACg---CGCGGGccGCCGCGcCg -3'
miRNA:   3'- aaUGGUUGaugaGCGUCU--CGGCGCuG- -5'
6641 3' -54.3 NC_001847.1 + 131456 0.66 0.926335
Target:  5'- cUACCuguGgUGCgCGCAG-GCuCGCGGCg -3'
miRNA:   3'- aAUGGu--UgAUGaGCGUCuCG-GCGCUG- -5'
6641 3' -54.3 NC_001847.1 + 106390 0.66 0.926335
Target:  5'- -cGCCAGCUGCagGUccGGGCCcGCGAg -3'
miRNA:   3'- aaUGGUUGAUGagCGu-CUCGG-CGCUg -5'
6641 3' -54.3 NC_001847.1 + 81136 0.66 0.926335
Target:  5'- -aGCUcGCUGaccgCGUAGAGCCaacGCGGCg -3'
miRNA:   3'- aaUGGuUGAUga--GCGUCUCGG---CGCUG- -5'
6641 3' -54.3 NC_001847.1 + 131257 0.66 0.925779
Target:  5'- -cGCgCAACgGCUCGCuccgcugGGAGCUGCG-Ca -3'
miRNA:   3'- aaUG-GUUGaUGAGCG-------UCUCGGCGCuG- -5'
6641 3' -54.3 NC_001847.1 + 88475 0.66 0.922964
Target:  5'- -cGCguGCUGCUCGCccuacucugccgaauGGAcgacggcgGCUGCGACg -3'
miRNA:   3'- aaUGguUGAUGAGCG---------------UCU--------CGGCGCUG- -5'
6641 3' -54.3 NC_001847.1 + 56487 0.66 0.920665
Target:  5'- -cGCCGGCga--CGCAGGcGCgCGCGACc -3'
miRNA:   3'- aaUGGUUGaugaGCGUCU-CG-GCGCUG- -5'
6641 3' -54.3 NC_001847.1 + 19252 0.66 0.920665
Target:  5'- -aGCCGGCcaaGCggCGC-GAGCCgGCGGCg -3'
miRNA:   3'- aaUGGUUGa--UGa-GCGuCUCGG-CGCUG- -5'
6641 3' -54.3 NC_001847.1 + 31166 0.66 0.920665
Target:  5'- -gGCCuuCUGCgcggccgCGCugccGGAGCCGCG-Cg -3'
miRNA:   3'- aaUGGuuGAUGa------GCG----UCUCGGCGCuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.